Click here to switch to the map view.

The map label for this gene is rpl18p [H]

Identifier: 161485665

GI number: 161485665

Start: 26170

End: 26769

Strand: Reverse

Name: rpl18p [H]

Synonym: MK0030

Alternate gene names: 161485665

Gene position: 26769-26170 (Counterclockwise)

Preceding gene: 20093471

Following gene: 20093469

Centisome position: 1.58

GC content: 61.33

Gene sequence:

>600_bases
TTGGCCACGGGTCCCAGGTATCGGGTTCCGTTCAGAAGGCGTCGCGAGGGTAAGACCAACTACTACAAGCGACGTGAGTT
AATCAAGGCCGACGCTCCGCGCCTAGTGGCCAGGAAAACGCTCAACCACAACATCGCCCAGATCGTCGACTTCGCCCCAC
ATGGTGACGTCACACTGGCATCGGCCCACTCCATCGAGCTGCGCAACAAGTTCGGCTGGAAGGGACACTGCGGAAACACA
CCGGCGGCCTATCTGACGGGTTACCTGTGCGGTCTCCGAGCGCTTGAACGGGGCATCGAGCGAGCGGTGATCGACATAGG
ACTCCACCGACCCGTGCGGGGCTCCCGAGTGTTCGCCATGCTGAAGGGAGCCCTCGACGCCGGCATGGACATACCGCACG
GGGAGGAGGTGCTCCCACCGGAGGACAGGATCCGTGGTGAGCACATCGCCAACCTGGCCCGACAGATCAAGGAAGAGGAC
CCGGAGGAGTACGAGCGCAGGTTCTCCAAGTACCTCGAACGTGGTCTGAAACCGGAAGAACTCCCGGAACACTTCGAGGA
AGTAAAGTCCAAAATCGAGGAGGAGTTCGGCGGCGCGTGA

Upstream 100 bases:

>100_bases
GCTGTACATGATGGCGAAGGGAGGATACTTCCGCGACACCTCGCACCTGTTGGCGTACATCGAGGAGAACGACCTGTGGA
AGAAGTAAGGGGTGATTGCG

Downstream 100 bases:

>100_bases
CGGGGGCGATGCGAGCATGTCCGTTCCACCACATCTGGAGGAGTGGGAACCCAAGACCAAACTAGGTCGCATGGTCAAGG
AGGGCGAGATCAAGACTATC

Product: 50S ribosomal protein L18P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MATGPRYRVPFRRRREGKTNYYKRRELIKADAPRLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNT
PAAYLTGYLCGLRALERGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDRIRGEHIANLARQIKEED
PEEYERRFSKYLERGLKPEELPEHFEEVKSKIEEEFGGA

Sequences:

>Translated_199_residues
MATGPRYRVPFRRRREGKTNYYKRRELIKADAPRLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNT
PAAYLTGYLCGLRALERGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDRIRGEHIANLARQIKEED
PEEYERRFSKYLERGLKPEELPEHFEEVKSKIEEEFGGA
>Mature_198_residues
ATGPRYRVPFRRRREGKTNYYKRRELIKADAPRLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTP
AAYLTGYLCGLRALERGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDRIRGEHIANLARQIKEEDP
EEYERRFSKYLERGLKPEELPEHFEEVKSKIEEEFGGA

Specific function: This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance [H]

COG id: COG0256

COG function: function code J; Ribosomal protein L18

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18P family [H]

Homologues:

Organism=Homo sapiens, GI14591909, Length=236, Percent_Identity=31.7796610169492, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17534333, Length=234, Percent_Identity=35.8974358974359, Blast_Score=127, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6325126, Length=238, Percent_Identity=31.9327731092437, Blast_Score=108, Evalue=6e-25,
Organism=Drosophila melanogaster, GI116007384, Length=237, Percent_Identity=31.6455696202532, Blast_Score=113, Evalue=7e-26,
Organism=Drosophila melanogaster, GI116007382, Length=237, Percent_Identity=31.6455696202532, Blast_Score=113, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005484
- InterPro:   IPR005485 [H]

Pfam domain/function: PF00861 Ribosomal_L18p [H]

EC number: NA

Molecular weight: Translated: 22723; Mature: 22592

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGPRYRVPFRRRREGKTNYYKRRELIKADAPRLVARKTLNHNIAQIVDFAPHGDVTLA
CCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEC
SAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRALERGIERAVIDIGLHRPVRGSRVFAM
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LKGALDAGMDIPHGEEVLPPEDRIRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEE
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH
LPEHFEEVKSKIEEEFGGA
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATGPRYRVPFRRRREGKTNYYKRRELIKADAPRLVARKTLNHNIAQIVDFAPHGDVTLA
CCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEC
SAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRALERGIERAVIDIGLHRPVRGSRVFAM
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LKGALDAGMDIPHGEEVLPPEDRIRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEE
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH
LPEHFEEVKSKIEEEFGGA
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014 [H]