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The map label for this gene is nusB [H]

Identifier: 19746754

GI number: 19746754

Start: 1565122

End: 1565574

Strand: Reverse

Name: nusB [H]

Synonym: spyM18_1884

Alternate gene names: 19746754

Gene position: 1565574-1565122 (Counterclockwise)

Preceding gene: 19746755

Following gene: 19746751

Centisome position: 82.62

GC content: 36.64

Gene sequence:

>453_bases
ATGACTAACAGCTTTCAAAATTCAAGAAGAGATTTGCGTGAACGTGCCTTTCAGGCTTTATTTAACATAGAGATGGGAGC
TGAGTTATTGGCAGCTTCTCAGTTTGCCTATGGTTATGATAAAGTAACAGGGGAGGACGCTCAAGTATTGGAGCTGCCGA
TTTTTTTATTAAGTCTTGTGACGGGTGTCAATAATCATAAAGAAGAGTTGGATAACTTGATATCAACTCATTTGAAAAAA
GGTTGGTCGTTAGAACGCTTGACACTAACAGACAAAACGTTATTACGGCTAGGTCTTTTTGAAATCAAGTATTTTGACGA
AACACCAGATCGTGTTGCACTAAACGAAATCATTGAAGTAGCTAAAAAATATTCTGATGAAACCTCTGCTAAATTTATTA
ATGGCTTACTTAGCCAATATGTCTCGGAAGCTCCTTCAGCAAATAAATCATAA

Upstream 100 bases:

>100_bases
GAAGTGCCTATTTCTGCAGTTAATATCCATGTTGAAGGTATTGTTGCGGAAAAGACACCAAAACCAGATTTGAAGTCACT
TTTTGATGAGGATTTCTTGG

Downstream 100 bases:

>100_bases
TAAGTCGGAGCAATCTTAGGATTGTATCCGATTTTTTCAATTTATGTACGAATATTAAAAGACAAACAAGCATACTCTCG
CATCTAGAAAGAGTATGCTT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MTNSFQNSRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTGVNNHKEELDNLISTHLKK
GWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAKKYSDETSAKFINGLLSQYVSEAPSANKS

Sequences:

>Translated_150_residues
MTNSFQNSRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTGVNNHKEELDNLISTHLKK
GWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAKKYSDETSAKFINGLLSQYVSEAPSANKS
>Mature_149_residues
TNSFQNSRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTGVNNHKEELDNLISTHLKKG
WSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAKKYSDETSAKFINGLLSQYVSEAPSANKS

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=126, Percent_Identity=30.1587301587302, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 16979; Mature: 16848

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSFQNSRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTGEDAQVLELPIFLLSLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHH
TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV
HCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AKKYSDETSAKFINGLLSQYVSEAPSANKS
HHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TNSFQNSRRDLRERAFQALFNIEMGAELLAASQFAYGYDKVTGEDAQVLELPIFLLSLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHHHH
TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV
HCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AKKYSDETSAKFINGLLSQYVSEAPSANKS
HHHHCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]