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The map label for this gene is yqxC [H]

Identifier: 19746451

GI number: 19746451

Start: 1247605

End: 1248432

Strand: Reverse

Name: yqxC [H]

Synonym: spyM18_1515

Alternate gene names: 19746451

Gene position: 1248432-1247605 (Counterclockwise)

Preceding gene: 19746452

Following gene: 19746450

Centisome position: 65.88

GC content: 42.87

Gene sequence:

>828_bases
ATGCCTAAAGAAAGAGTAGATGTGTTAGCCTATAAGCAAGGATTATTTGAGACCAGAGAGCAAGCTAAGCGTGGTGTCAT
GGCAGGCTTAGTGGTCTCTGTGATTAATGGCCAACGCTATGACAAGCCAGGTGACAAAATTGACGATGGGACTGAGTTAA
AACTTAAAGGTGAAAAACTCAAATACGTCAGTCGTGGTGGATTAAAACTGGAAAAGGGGCTGCATGTTTTTGGTGTATCG
GTTGCTAATCAAATTGGGATTGATATTGGCGCTTCAACAGGTGGTTTTACCGATGTTATGTTACAAGATGGGGCCAAACT
AGTCTATGCCGTCGACGTTGGGACTAACCAGTTGGTATGGAAACTCAGACAAGATCCACGAGTGAGAAGTATGGAACAGT
ATAACTTTCGTTATGCTCAGCCAGAGGACTTTAATGAGGGACAGCCTGTATTTGCCAGTATTGATGTGTCCTTTATTTCT
CTCAGCTTGATTTTGCCAGCCCTGCATAACGTTTTGTCAGATCAGGGACAGGTTATTGCTCTCATTAAACCGCAATTTGA
AGCTGGGCGCGAGCAGATTGGTAAAAAAGGCATCGTCAAGGACAAACAGATTCATGAAAAAGTGATTCAAAAGGTCATGG
ATTTTGCCTCAGGTTACGGATTTACAGTTAAGGGACTTGATTTTTCCCCTATTCAGGGTGGTCATGGCAATATCGAATTT
TTAGCTCATCTTGCTAAGTCACAGACACCTGAAACGTTAGCCCCGCATTTGGTTCAGGAAGTTGTTGCCAAGGCACATAA
GGAGTTTGAGAAACATGAAAAAGAGTGA

Upstream 100 bases:

>100_bases
GAGAGTTTAGATCAGGCTTTGACGATTTTTCAGACACTAGAAAGCGATGTAGGCTTTAAGCCTCAAATAATTACAAAACT
GATAGAAGGGTTACGACTTA

Downstream 100 bases:

>100_bases
ACGACTTGAATTAATCAAAAAAATGGTTTTGACGCATCCAATTGAGACGCAACATGACCTCTTAAGATTATTGGCAGAGC
ATGGGTTAGAATTAACCCAG

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MPKERVDVLAYKQGLFETREQAKRGVMAGLVVSVINGQRYDKPGDKIDDGTELKLKGEKLKYVSRGGLKLEKGLHVFGVS
VANQIGIDIGASTGGFTDVMLQDGAKLVYAVDVGTNQLVWKLRQDPRVRSMEQYNFRYAQPEDFNEGQPVFASIDVSFIS
LSLILPALHNVLSDQGQVIALIKPQFEAGREQIGKKGIVKDKQIHEKVIQKVMDFASGYGFTVKGLDFSPIQGGHGNIEF
LAHLAKSQTPETLAPHLVQEVVAKAHKEFEKHEKE

Sequences:

>Translated_275_residues
MPKERVDVLAYKQGLFETREQAKRGVMAGLVVSVINGQRYDKPGDKIDDGTELKLKGEKLKYVSRGGLKLEKGLHVFGVS
VANQIGIDIGASTGGFTDVMLQDGAKLVYAVDVGTNQLVWKLRQDPRVRSMEQYNFRYAQPEDFNEGQPVFASIDVSFIS
LSLILPALHNVLSDQGQVIALIKPQFEAGREQIGKKGIVKDKQIHEKVIQKVMDFASGYGFTVKGLDFSPIQGGHGNIEF
LAHLAKSQTPETLAPHLVQEVVAKAHKEFEKHEKE
>Mature_274_residues
PKERVDVLAYKQGLFETREQAKRGVMAGLVVSVINGQRYDKPGDKIDDGTELKLKGEKLKYVSRGGLKLEKGLHVFGVSV
ANQIGIDIGASTGGFTDVMLQDGAKLVYAVDVGTNQLVWKLRQDPRVRSMEQYNFRYAQPEDFNEGQPVFASIDVSFISL
SLILPALHNVLSDQGQVIALIKPQFEAGREQIGKKGIVKDKQIHEKVIQKVMDFASGYGFTVKGLDFSPIQGGHGNIEFL
AHLAKSQTPETLAPHLVQEVVAKAHKEFEKHEKE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30427; Mature: 30296

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKERVDVLAYKQGLFETREQAKRGVMAGLVVSVINGQRYDKPGDKIDDGTELKLKGEKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHH
KYVSRGGLKLEKGLHVFGVSVANQIGIDIGASTGGFTDVMLQDGAKLVYAVDVGTNQLVW
HHHHCCCEEECCCCEEEEEHHHHHHCCEECCCCCCHHHHEECCCCEEEEEEECCCCHHHH
KLRQDPRVRSMEQYNFRYAQPEDFNEGQPVFASIDVSFISLSLILPALHNVLSDQGQVIA
EECCCCCHHHHHHCCCEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEE
LIKPQFEAGREQIGKKGIVKDKQIHEKVIQKVMDFASGYGFTVKGLDFSPIQGGHGNIEF
EECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH
LAHLAKSQTPETLAPHLVQEVVAKAHKEFEKHEKE
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PKERVDVLAYKQGLFETREQAKRGVMAGLVVSVINGQRYDKPGDKIDDGTELKLKGEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHH
KYVSRGGLKLEKGLHVFGVSVANQIGIDIGASTGGFTDVMLQDGAKLVYAVDVGTNQLVW
HHHHCCCEEECCCCEEEEEHHHHHHCCEECCCCCCHHHHEECCCCEEEEEEECCCCHHHH
KLRQDPRVRSMEQYNFRYAQPEDFNEGQPVFASIDVSFISLSLILPALHNVLSDQGQVIA
EECCCCCHHHHHHCCCEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEE
LIKPQFEAGREQIGKKGIVKDKQIHEKVIQKVMDFASGYGFTVKGLDFSPIQGGHGNIEF
EECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH
LAHLAKSQTPETLAPHLVQEVVAKAHKEFEKHEKE
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]