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The map label for this gene is recJ [H]

Identifier: 18978427

GI number: 18978427

Start: 1894803

End: 1896236

Strand: Reverse

Name: recJ [H]

Synonym: PF2055

Alternate gene names: 18978427

Gene position: 1896236-1894803 (Counterclockwise)

Preceding gene: 18978428

Following gene: 33359593

Centisome position: 99.37

GC content: 42.05

Gene sequence:

>1434_bases
ATGGATAAGGAGGGTTTTTTGAACAAGGTTAGGGAGGCTGTGGATGTAGTAAAGCTCCACATCGAGTTAGGTCATACTAT
AAGGATAATCTCTCATAGGGATGCGGATGGAATAACCTCTGCGGCAATTCTTGCAAAGGCTTTGGGAAGAGAAGGAGCGA
GCTTTCACATTTCGATTGTTAAACAGGTAAGTGAAGATCTTTTAAGAGAATTAAAGGATGAAGATTACAAAATCTTCATT
TTTTCCGACCTGGGTAGTGGTTCTTTAAGTTTGATAAAAGAGTATCTTAAGGAAAAAACTGTTATAATCCTTGATCACCA
TCCTCCGGAAAATGTGAAGTTGGAAGAAAAGCATATACTTGTTAATCCAGTTCAATTTGGCGCAAATAGCGTTAGGGATC
TGAGTGGATCTGGGGTTACATACTTCTTTGCAAGGGAGCTAAATGAAAAGAATAGGGACCTTGCTTACATTGCAATAGTG
GGAGCAGTTGGGGATATGCAAGAGAACGATGGAGTTTTCCATGGGATGAACCTTGATATTATTGAAGATGGGAAATCTCT
GGGAATTCTTGAGGTTAAAAAAGAATTGCGCCTGTTTGGTAGGGAAACTAGACCTCTCTATCAAATGCTCGCATATGCCA
CAAATCCGGAAATTCCTGAAGTTACTGGAGACGAGAGGAAGGCCATAGAGTGGTTAAAGAACAAGGGCTTCAATCCCGAG
AAAAAATATTGGGAATTAAGTGAGGAGGAAAAGAAAAAGTTACATGATTTCCTAATCATTCACATGATCAAGCATGGAGC
TGGAAAAGAGGATATAGATAGGCTAATAGGAGACGTTGTTATTAGTCCCTTATATCCTGAAGGGGATCCCAGGCACGAGG
CTAGAGAATTTGCTACCCTATTAAACGCTACAGGCAGGTTAAACTTGGGCAACTTAGGAGTGGCTGTATGTTTGGGAGAT
GAGGAGGCTTTCAGAAAGGCCCTAAAGATGGTTGAAGACTACAAGAGGGAGCAAATTGAAGCAAGAAAGTGGCTACTTCA
AAATTGGAACAGTGAAGTTTGGGAGGGGGATCATGTTTACGTCTTATATGTGGGAAAGAGTATTAGAGATACTCTCGTTG
GAATAGCAGCTAGCATGGCCATCAATGCTGGACTGGCAGATCCTGAAAAGCCGGTTATAGTGTTTGCAGATACTGATGAA
GATCCAAACCTTCTCAAAGGTTCAGCTAGAACAACTGAAAGGGCTTTAGCTAAGGGTTACAATTTGGGAGAAGCTCTTAG
GAAAGCGGCTGAGCTAGTGAATGGGGAAGGGGGAGGACACGCGATAGCTGCAGGTATAAGAATTCCCAGGGCCAGGTTGG
CGGAGTTTAGAAAATTAATAGATAAAATCCTTGGAGAACAGGTGAGCAAAGGTGGAGATAAAAGCGAAAGCTGA

Upstream 100 bases:

>100_bases
AAGAGGAAGGGTAAGCTTCCAAAGAACTGGCGTTACGACCCAGAGACTGCAAAGTTGCTCGTCCGCTGATCCTTCCCTAT
ATTTTCATTTGGTGTTTTTC

Downstream 100 bases:

>100_bases
AATATTGTGGGAGTACAGCGATGAGAAGGTTGCTGAGGCTATTGCGAAGTCTGTTGATGTTGATAATATTTCTCTCCCTC
CAAACCTCAAGAAAAGTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MDKEGFLNKVREAVDVVKLHIELGHTIRIISHRDADGITSAAILAKALGREGASFHISIVKQVSEDLLRELKDEDYKIFI
FSDLGSGSLSLIKEYLKEKTVIILDHHPPENVKLEEKHILVNPVQFGANSVRDLSGSGVTYFFARELNEKNRDLAYIAIV
GAVGDMQENDGVFHGMNLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEVTGDERKAIEWLKNKGFNPE
KKYWELSEEEKKKLHDFLIIHMIKHGAGKEDIDRLIGDVVISPLYPEGDPRHEAREFATLLNATGRLNLGNLGVAVCLGD
EEAFRKALKMVEDYKREQIEARKWLLQNWNSEVWEGDHVYVLYVGKSIRDTLVGIAASMAINAGLADPEKPVIVFADTDE
DPNLLKGSARTTERALAKGYNLGEALRKAAELVNGEGGGHAIAAGIRIPRARLAEFRKLIDKILGEQVSKGGDKSES

Sequences:

>Translated_477_residues
MDKEGFLNKVREAVDVVKLHIELGHTIRIISHRDADGITSAAILAKALGREGASFHISIVKQVSEDLLRELKDEDYKIFI
FSDLGSGSLSLIKEYLKEKTVIILDHHPPENVKLEEKHILVNPVQFGANSVRDLSGSGVTYFFARELNEKNRDLAYIAIV
GAVGDMQENDGVFHGMNLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEVTGDERKAIEWLKNKGFNPE
KKYWELSEEEKKKLHDFLIIHMIKHGAGKEDIDRLIGDVVISPLYPEGDPRHEAREFATLLNATGRLNLGNLGVAVCLGD
EEAFRKALKMVEDYKREQIEARKWLLQNWNSEVWEGDHVYVLYVGKSIRDTLVGIAASMAINAGLADPEKPVIVFADTDE
DPNLLKGSARTTERALAKGYNLGEALRKAAELVNGEGGGHAIAAGIRIPRARLAEFRKLIDKILGEQVSKGGDKSES
>Mature_477_residues
MDKEGFLNKVREAVDVVKLHIELGHTIRIISHRDADGITSAAILAKALGREGASFHISIVKQVSEDLLRELKDEDYKIFI
FSDLGSGSLSLIKEYLKEKTVIILDHHPPENVKLEEKHILVNPVQFGANSVRDLSGSGVTYFFARELNEKNRDLAYIAIV
GAVGDMQENDGVFHGMNLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEVTGDERKAIEWLKNKGFNPE
KKYWELSEEEKKKLHDFLIIHMIKHGAGKEDIDRLIGDVVISPLYPEGDPRHEAREFATLLNATGRLNLGNLGVAVCLGD
EEAFRKALKMVEDYKREQIEARKWLLQNWNSEVWEGDHVYVLYVGKSIRDTLVGIAASMAINAGLADPEKPVIVFADTDE
DPNLLKGSARTTERALAKGYNLGEALRKAAELVNGEGGGHAIAAGIRIPRARLAEFRKLIDKILGEQVSKGGDKSES

Specific function: Single-stranded-DNA-specific exonuclease [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: NA

Molecular weight: Translated: 53190; Mature: 53190

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKEGFLNKVREAVDVVKLHIELGHTIRIISHRDADGITSAAILAKALGREGASFHISIV
CCCHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEHHHHH
KQVSEDLLRELKDEDYKIFIFSDLGSGSLSLIKEYLKEKTVIILDHHPPENVKLEEKHIL
HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCEEECCEEE
VNPVQFGANSVRDLSGSGVTYFFARELNEKNRDLAYIAIVGAVGDMQENDGVFHGMNLDI
ECCHHHCCCHHHHCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCCCCCCCCEEECCCEEE
IEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEVTGDERKAIEWLKNKGFNPE
EECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC
KKYWELSEEEKKKLHDFLIIHMIKHGAGKEDIDRLIGDVVISPLYPEGDPRHEAREFATL
HHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LNATGRLNLGNLGVAVCLGDEEAFRKALKMVEDYKREQIEARKWLLQNWNSEVWEGDHVY
HHCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
VLYVGKSIRDTLVGIAASMAINAGLADPEKPVIVFADTDEDPNLLKGSARTTERALAKGY
EEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHCCCCHHHHHHHHCCC
NLGEALRKAAELVNGEGGGHAIAAGIRIPRARLAEFRKLIDKILGEQVSKGGDKSES
CHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDKEGFLNKVREAVDVVKLHIELGHTIRIISHRDADGITSAAILAKALGREGASFHISIV
CCCHHHHHHHHHHHHHHHHHEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEHHHHH
KQVSEDLLRELKDEDYKIFIFSDLGSGSLSLIKEYLKEKTVIILDHHPPENVKLEEKHIL
HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCEEECCEEE
VNPVQFGANSVRDLSGSGVTYFFARELNEKNRDLAYIAIVGAVGDMQENDGVFHGMNLDI
ECCHHHCCCHHHHCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCCCCCCCCEEECCCEEE
IEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEVTGDERKAIEWLKNKGFNPE
EECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC
KKYWELSEEEKKKLHDFLIIHMIKHGAGKEDIDRLIGDVVISPLYPEGDPRHEAREFATL
HHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LNATGRLNLGNLGVAVCLGDEEAFRKALKMVEDYKREQIEARKWLLQNWNSEVWEGDHVY
HHCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
VLYVGKSIRDTLVGIAASMAINAGLADPEKPVIVFADTDEDPNLLKGSARTTERALAKGY
EEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHCCCCHHHHHHHHCCC
NLGEALRKAAELVNGEGGGHAIAAGIRIPRARLAEFRKLIDKILGEQVSKGGDKSES
CHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087; 10633092 [H]