Click here to switch to the map view.

The map label for this gene is rplP0

Identifier: 18978365

GI number: 18978365

Start: 1842167

End: 1843186

Strand: Direct

Name: rplP0

Synonym: PF1993

Alternate gene names: 18978365

Gene position: 1842167-1843186 (Clockwise)

Preceding gene: 18978364

Following gene: 18978366

Centisome position: 96.54

GC content: 46.18

Gene sequence:

>1020_bases
ATGGCTCACGTAGCCGAGTGGAAGAAAAAGGAAGTTGAAGAGCTCGCAAATCTAATCAAAAGTTATCCAGTAGTTGCACT
GGTTGACGTTTCAAGCATGCCTGCTTACCCACTTTCACAGATGAGGAGGTTAATCAGGGAAAACAATGGCCTCCTTAGGG
TGTCTAGGAACACTCTCATAGAGCTTGCAATAAAGAAGGTTGCTCAAGAACTAGGAAAGCCAGAGCTTGAAAAGCTAATA
AACTACATAGAGGGCGGAGCTGGAATTTTAGTTACAACAATGAATCCATTCAAGCTTTACAAGTTCCTTCAGCAGAACAG
ACAACCTGCCCCAGCCAAACCTGGAGCAAAGGTTCCTAAGGATGTCGTAATTCCCGCCGGTCCAACTTCTCTAGCTCCTG
GGCCAATAGTTGGTCAGATGCAGGCCATGGGAATACCTGCAAGAATCGAGAGGGGTAAGGTAACAATACAAAAGGACACC
GTTGTGCTGAAGGCTGGAGAAGAGATAACTCCCGAGTTAGCAAATATTCTTAATGCTCTCGGAATTCAACCACTTGAAGT
AGGTTTGGACTTGCTTGCTGTTTATGAGGATGGAATAATTTACACCCCAGACGTATTGGCCATCGATGAGAGCGAGTACA
TAAACATGCTCCAAAAGGCCTACATGCACGCATTCAACTTGGCAGTAAACATAGCCTATCCAACGCCTCAGACAATCGAA
GCAATTATTCAGAAGGCATTCCTCAACGCAAAGGCTGTGGCCGTGGAAGCTGGCTACATTACCAAGGAGACAATCTCAGA
TATCATTGGAAGGGCCATCAGAGCAATGCTACTCCTTGCCCAGCAATTGCCTGAAGATGTGCTAGATGAGAAGACCAAAG
AGCTTTTAAGTGCACAGGCTCAAGTTAGCGTAGCCCAGGTTGAGGAGGAAAAGAAGGAGGAAAAGGTTGAAGAGGAAAAA
GAGGATGAAGAAGCCTCCGAGGAGGAGGCTCTTGCCGGATTGAGTGCTCTATTTGGATGA

Upstream 100 bases:

>100_bases
ACGCAATAATAGGAAAGCTCGAGAGGGGAGAGAGTCAAGTTAAGTCAGTGTACGTTAAGACAACAATGGGCCCAGCTGTT
AAGATAGAGGGGTGATGTGA

Downstream 100 bases:

>100_bases
ATCACGCGTACTCTCAATAAATAAAGCTGATCGGAGGTGTGAAGAGATGGAGTATGTGTATGCTGCTCTGCTCCTACACA
GCGTTGGGAAAGAGATAAAT

Product: acidic ribosomal protein P0

Products: NA

Alternate protein names: L10E

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MAHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLI
NYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDT
VVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIE
AIIQKAFLNAKAVAVEAGYITKETISDIIGRAIRAMLLLAQQLPEDVLDEKTKELLSAQAQVSVAQVEEEKKEEKVEEEK
EDEEASEEEALAGLSALFG

Sequences:

>Translated_339_residues
MAHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLI
NYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDT
VVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIE
AIIQKAFLNAKAVAVEAGYITKETISDIIGRAIRAMLLLAQQLPEDVLDEKTKELLSAQAQVSVAQVEEEKKEEKVEEEK
EDEEASEEEALAGLSALFG
>Mature_338_residues
AHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLIN
YIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTV
VLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEA
IIQKAFLNAKAVAVEAGYITKETISDIIGRAIRAMLLLAQQLPEDVLDEKTKELLSAQAQVSVAQVEEEKKEEKVEEEKE
DEEASEEEALAGLSALFG

Specific function: Ribosomal protein P0 is the functional equivalent of E.coli protein L10

COG id: COG0244

COG function: function code J; Ribosomal protein L10

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10P family

Homologues:

Organism=Homo sapiens, GI4506667, Length=255, Percent_Identity=29.0196078431373, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI16933546, Length=255, Percent_Identity=29.0196078431373, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI18490987, Length=191, Percent_Identity=22.5130890052356, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17506815, Length=268, Percent_Identity=29.8507462686567, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6323371, Length=271, Percent_Identity=27.3062730627306, Blast_Score=100, Evalue=3e-22,
Organism=Drosophila melanogaster, GI17737731, Length=250, Percent_Identity=28.4, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI19921958, Length=175, Percent_Identity=25.1428571428571, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLA0_PYRFU (Q8TZJ8)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_579722.1
- ProteinModelPortal:   Q8TZJ8
- EnsemblBacteria:   EBPYRT00000005791
- GeneID:   1469877
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF1993
- NMPDR:   fig|186497.1.peg.2047
- GeneTree:   EBGT00050000022985
- HOGENOM:   HBG731512
- OMA:   GKNTMIR
- ProtClustDB:   PRK04019
- GO:   GO:0005840
- HAMAP:   MF_00280
- InterPro:   IPR001813
- InterPro:   IPR001790
- InterPro:   IPR013522
- InterPro:   IPR022909
- Gene3D:   G3DSA:1.10.10.380

Pfam domain/function: PF00428 Ribosomal_60s; PF00466 Ribosomal_L10

EC number: NA

Molecular weight: Translated: 37130; Mature: 36998

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLI
CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEHHHHHH
ELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPK
HHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCC
DVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNAL
CEEECCCCCCCCCCCCHHHHHHCCCCCEECCCEEEEEECEEEEECCCCCCHHHHHHHHHH
GIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIE
CCCHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHHHHHHHHHHEEEEECCCHHHHH
AIIQKAFLNAKAVAVEAGYITKETISDIIGRAIRAMLLLAQQLPEDVLDEKTKELLSAQA
HHHHHHHHCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
QVSVAQVEEEKKEEKVEEEKEDEEASEEEALAGLSALFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLI
CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEHHHHHH
ELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPK
HHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCC
DVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNAL
CEEECCCCCCCCCCCCHHHHHHCCCCCEECCCEEEEEECEEEEECCCCCCHHHHHHHHHH
GIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIE
CCCHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHHHHHHHHHHEEEEECCCHHHHH
AIIQKAFLNAKAVAVEAGYITKETISDIIGRAIRAMLLLAQQLPEDVLDEKTKELLSAQA
HHHHHHHHCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
QVSVAQVEEEKKEEKVEEEKEDEEASEEEALAGLSALFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA