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The map label for this gene is rpl12p [H]

Identifier: 18978366

GI number: 18978366

Start: 1843233

End: 1843556

Strand: Direct

Name: rpl12p [H]

Synonym: PF1994

Alternate gene names: 18978366

Gene position: 1843233-1843556 (Clockwise)

Preceding gene: 18978365

Following gene: 18978367

Centisome position: 96.59

GC content: 50.93

Gene sequence:

>324_bases
ATGGAGTATGTGTATGCTGCTCTGCTCCTACACAGCGTTGGGAAAGAGATAAATGAGGAGAACCTTAAGGCTGTCCTCCA
GGCTGCAGGTGTTGAGCCAGATGAGGCAAGAATAAAGGCCCTAGTTGCAGCCCTTGAAGGAGTTAACATTGACGAGGTAA
TTGAAAAGGCAGCAATGCCAGTTGCAGTTGCTGCAGCCCCAGCAGCAGCTCCCGCAGGAGGAGGAGAAGAGAAGAAAGAA
GAGGAAAAGAAGGAAGAAGAGGAGAAGGAAGAAGAGGTCTCCGAAGAGGAAGCCCTTGCTGGACTCAGCGCACTCTTTGG
ATGA

Upstream 100 bases:

>100_bases
GAAGAAGCCTCCGAGGAGGAGGCTCTTGCCGGATTGAGTGCTCTATTTGGATGAATCACGCGTACTCTCAATAAATAAAG
CTGATCGGAGGTGTGAAGAG

Downstream 100 bases:

>100_bases
CTTCGTTTTTCTTCCCTTTTCTCCATATCTTACAGTCATAAAACATGGTAATTTTGTAATTTTTATAATGCTTTGACAAA
ATTATATACAAGAGAGGGAT

Product: 50S ribosomal protein L12P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MEYVYAALLLHSVGKEINEENLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMPVAVAAAPAAAPAGGGEEKKE
EEKKEEEEKEEEVSEEEALAGLSALFG

Sequences:

>Translated_107_residues
MEYVYAALLLHSVGKEINEENLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMPVAVAAAPAAAPAGGGEEKKE
EEKKEEEEKEEEVSEEEALAGLSALFG
>Mature_107_residues
MEYVYAALLLHSVGKEINEENLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMPVAVAAAPAAAPAGGGEEKKE
EEKKEEEEKEEEVSEEEALAGLSALFG

Specific function: Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation [H]

COG id: COG2058

COG function: function code J; Ribosomal protein L12E/L44/L45/RPP1/RPP2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L12P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001813
- InterPro:   IPR022295 [H]

Pfam domain/function: PF00428 Ribosomal_60s [H]

EC number: NA

Molecular weight: Translated: 11246; Mature: 11246

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYVYAALLLHSVGKEINEENLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC
VAVAAAPAAAPAGGGEEKKEEEKKEEEEKEEEVSEEEALAGLSALFG
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEYVYAALLLHSVGKEINEENLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC
VAVAAAPAAAPAGGGEEKKEEEKKEEEEKEEEVSEEEALAGLSALFG
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]