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The map label for this gene is ydcM [C]

Identifier: 18978290

GI number: 18978290

Start: 1769133

End: 1770209

Strand: Direct

Name: ydcM [C]

Synonym: PF1918

Alternate gene names: 18978290

Gene position: 1769133-1770209 (Clockwise)

Preceding gene: 18978289

Following gene: 18978291

Centisome position: 92.71

GC content: 41.88

Gene sequence:

>1077_bases
ATGCTAGAACAATCTATAGAAGCCTTCAAGGCCTGTGTAAATGATTGGCTTAGTGCAATTGCTCAGCTTGGGGAGAAGCC
CAACAGGGGCAACCTCCATAGATTTGCTTACAGAGCAATTAGGGACAAATACCCCCAGCTACACAGCAATGTTGTCCAAG
ATGCCATGAACTTGGCAATCGAAATCTATCGCTCTTGGCTCAAGAACGGAGGAGAATTTCCGAAGTTTCGCTCTGATGTT
ATTTACTTTAAAGGTGTTGATGTTAGGATAGAAAATAACGGATTGGTTGTCCCTTTAATGGGGAGGAGGGTTTATTTGCC
ACTATACGTTCCAAAGAAGTACAAGAAGTATCTTCAATACAAACACGGTAGAGTTATTATAAAACGTGTTGACAAAGATT
GGTATGCGTTGGTCTCGGTCAATGTTCCAGAAAAAGAACCAATAAAGCCCGTTGGAACAATTGGGGTGGACTTGGGATAC
TACAACTTGTTGGTGGCAAGCGATGAAAAGGGAAGAGTAGTTATGAGGGTTCAAGGGGACATATTAATAAGGCATAAGGA
ACATATGGAAAGGTTGACTGCTAGAAGGCAAGAGAGGCTTATGAAAAAGTTCGGCATTTATGCTAGGACAAACCACAAAG
ACAGGAGGTTTGTCAATGACTTAAACCATAAAATTGCTAAAGCACTTGTTTTAAAGGCAAAGCAGTTGAATAGGGCTATT
GTCCTTGAGAAGCTGAAGGGGCTGAAAAAGCAAAGGAGGCCGAAACTATTGAGGAAAATTTTACACCTTTGGAGCTATGC
AGACTTGATAGCAAAAATAGTTTACAAGGCAAAGCTATACGGTGTGCCAGTAATTTTTGTAAGCCCGAGAGGGACTTCAA
AGACGTGTTCAAACTGCGGTTACTACGTTAGAACTTTCAAAGATGATAGAGTGTTTAGGTGTCCAAAGTGCGGCTTTGTG
GCTGATAGGGATTATAATGCCTCAATAAATATTGCGAAAAAAGGTTTGGAAGAATTAAGAAAGCGGACTTTCCTCCCCAC
CCTAAAGGACGAGGCTTCCAGCCCACAAGGATGGTGA

Upstream 100 bases:

>100_bases
AAAAGTATTTAAAAGCTTTACGCAAAAAACATAATGAGTGCGTGAGATGAAGCTCACGCTAAAGATGAAAATGAGACCAT
TAACAAGGAGCAAAGAATGG

Downstream 100 bases:

>100_bases
TGTGAGATGGTAAGGTTTGGGATTATAAGCTACGCTCACCCTCACGCGTTGAGGTATGCCCCCGTAATTAAGGCGAGCAG
AAGGGCTAAGCTTGTTGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MLEQSIEAFKACVNDWLSAIAQLGEKPNRGNLHRFAYRAIRDKYPQLHSNVVQDAMNLAIEIYRSWLKNGGEFPKFRSDV
IYFKGVDVRIENNGLVVPLMGRRVYLPLYVPKKYKKYLQYKHGRVIIKRVDKDWYALVSVNVPEKEPIKPVGTIGVDLGY
YNLLVASDEKGRVVMRVQGDILIRHKEHMERLTARRQERLMKKFGIYARTNHKDRRFVNDLNHKIAKALVLKAKQLNRAI
VLEKLKGLKKQRRPKLLRKILHLWSYADLIAKIVYKAKLYGVPVIFVSPRGTSKTCSNCGYYVRTFKDDRVFRCPKCGFV
ADRDYNASINIAKKGLEELRKRTFLPTLKDEASSPQGW

Sequences:

>Translated_358_residues
MLEQSIEAFKACVNDWLSAIAQLGEKPNRGNLHRFAYRAIRDKYPQLHSNVVQDAMNLAIEIYRSWLKNGGEFPKFRSDV
IYFKGVDVRIENNGLVVPLMGRRVYLPLYVPKKYKKYLQYKHGRVIIKRVDKDWYALVSVNVPEKEPIKPVGTIGVDLGY
YNLLVASDEKGRVVMRVQGDILIRHKEHMERLTARRQERLMKKFGIYARTNHKDRRFVNDLNHKIAKALVLKAKQLNRAI
VLEKLKGLKKQRRPKLLRKILHLWSYADLIAKIVYKAKLYGVPVIFVSPRGTSKTCSNCGYYVRTFKDDRVFRCPKCGFV
ADRDYNASINIAKKGLEELRKRTFLPTLKDEASSPQGW
>Mature_358_residues
MLEQSIEAFKACVNDWLSAIAQLGEKPNRGNLHRFAYRAIRDKYPQLHSNVVQDAMNLAIEIYRSWLKNGGEFPKFRSDV
IYFKGVDVRIENNGLVVPLMGRRVYLPLYVPKKYKKYLQYKHGRVIIKRVDKDWYALVSVNVPEKEPIKPVGTIGVDLGY
YNLLVASDEKGRVVMRVQGDILIRHKEHMERLTARRQERLMKKFGIYARTNHKDRRFVNDLNHKIAKALVLKAKQLNRAI
VLEKLKGLKKQRRPKLLRKILHLWSYADLIAKIVYKAKLYGVPVIFVSPRGTSKTCSNCGYYVRTFKDDRVFRCPKCGFV
ADRDYNASINIAKKGLEELRKRTFLPTLKDEASSPQGW

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=327, Percent_Identity=24.4648318042813, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41654; Mature: 41654

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQSIEAFKACVNDWLSAIAQLGEKPNRGNLHRFAYRAIRDKYPQLHSNVVQDAMNLAI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
EIYRSWLKNGGEFPKFRSDVIYFKGVDVRIENNGLVVPLMGRRVYLPLYVPKKYKKYLQY
HHHHHHHHCCCCCCCCCCCEEEEECEEEEECCCCEEEEECCCEEEEEEECCHHHHHHHHH
KHGRVIIKRVDKDWYALVSVNVPEKEPIKPVGTIGVDLGYYNLLVASDEKGRVVMRVQGD
CCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEECCEEEEEEECCCCCEEEEEEECC
ILIRHKEHMERLTARRQERLMKKFGIYARTNHKDRRFVNDLNHKIAKALVLKAKQLNRAI
EEEECHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLEKLKGLKKQRRPKLLRKILHLWSYADLIAKIVYKAKLYGVPVIFVSPRGTSKTCSNCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHCCC
YYVRTFKDDRVFRCPKCGFVADRDYNASINIAKKGLEELRKRTFLPTLKDEASSPQGW
CEEEEECCCCEEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
>Mature Secondary Structure
MLEQSIEAFKACVNDWLSAIAQLGEKPNRGNLHRFAYRAIRDKYPQLHSNVVQDAMNLAI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
EIYRSWLKNGGEFPKFRSDVIYFKGVDVRIENNGLVVPLMGRRVYLPLYVPKKYKKYLQY
HHHHHHHHCCCCCCCCCCCEEEEECEEEEECCCCEEEEECCCEEEEEEECCHHHHHHHHH
KHGRVIIKRVDKDWYALVSVNVPEKEPIKPVGTIGVDLGYYNLLVASDEKGRVVMRVQGD
CCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEECCEEEEEEECCCCCEEEEEEECC
ILIRHKEHMERLTARRQERLMKKFGIYARTNHKDRRFVNDLNHKIAKALVLKAKQLNRAI
EEEECHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLEKLKGLKKQRRPKLLRKILHLWSYADLIAKIVYKAKLYGVPVIFVSPRGTSKTCSNCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHCCC
YYVRTFKDDRVFRCPKCGFVADRDYNASINIAKKGLEELRKRTFLPTLKDEASSPQGW
CEEEEECCCCEEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]