Click here to switch to the map view.

The map label for this gene is yrbE [H]

Identifier: 18978291

GI number: 18978291

Start: 1770216

End: 1771223

Strand: Direct

Name: yrbE [H]

Synonym: PF1919

Alternate gene names: 18978291

Gene position: 1770216-1771223 (Clockwise)

Preceding gene: 18978290

Following gene: 18978295

Centisome position: 92.77

GC content: 42.46

Gene sequence:

>1008_bases
ATGGTAAGGTTTGGGATTATAAGCTACGCTCACCCTCACGCGTTGAGGTATGCCCCCGTAATTAAGGCGAGCAGAAGGGC
TAAGCTTGTTGCAATATCAGGAGATGGGCCGAACTCTGGAGTTGCAAAGTTAGAAGCTAAGAAGTATGGAGCAAAATTCT
ATCCAACATATGAAGAATTGTTAAAGGACAAAACAATAGAGGCGGTTTACATTGCTACTGAAACATACAAGCACAAAGAA
GTAGCAATAAGAGCTGCAGAAGAGGGCAAGCACATACTCCTAGAAAAGCCAATAGCACTAACTCTAGAGGATGGGAAGGA
GATAATAAAAGCGGCAAGAAAAGCTGGAGTTAAGCTAATGGTTCCATTCAATCCCAGGTTCACTCAACCATTAAGAAAGG
CCAAAGAAATGATAGAAAACAACGAGATAGGAAGGTTAGAGTACATCTATGCAATTTCAGAGTATGTAAAGCCACCAATG
TTCTTAGAGGGCCTAGATACAAGCTGGTTCTTTGACGTAAGGAAGAGTGGAGGAGGAGGCTTCATGGATACGGCACCCCA
TGGAATAGATTCACTCTTCTGGCTTACGGAGAGTGATCCAGTGGAGGTTTATGCCGACATAGGAGCAAAGATATGGGGAT
TTAAAGTTGACGACATAGGAACCGCACTCATTAAGTTCAAAAACGGAGTTGTTACCCTACTAACAGCAGGGTGGGCGAAT
CCGAAAGGATACCCCGTGGGACTAGAGATGAAGTACTACATAGTCGGTGACGATGGGTTCCTTGATATAAGAACAGCTTA
TCCAGACTTCACAGTATATCAAGACAAGACCGAAAAGATTTACTGGGAGAGGGCAGATATAGAGGGGATAATTAACTCAT
TTATAGATGCAATTCAGCAAGATAAAGAACCTCCAATAACGGGAGAAGATGCACTCAAGAATTTAGCAGTAGTCCTTGCA
GCATATGAATCCTCAAAAACAGGAAAAACAGTAAAGATAGAGATTTAG

Upstream 100 bases:

>100_bases
AATAAATATTGCGAAAAAAGGTTTGGAAGAATTAAGAAAGCGGACTTTCCTCCCCACCCTAAAGGACGAGGCTTCCAGCC
CACAAGGATGGTGATGTGAG

Downstream 100 bases:

>100_bases
CTTCTACTCCTTAATTATTCCCGAAACAAGATCCCATATCGCCTTCTCTGGATCTTTTGCTTTTGTTACTCCACTTGCTA
AAAGAACCCCTACCGTTCCA

Product: putative dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MVRFGIISYAHPHALRYAPVIKASRRAKLVAISGDGPNSGVAKLEAKKYGAKFYPTYEELLKDKTIEAVYIATETYKHKE
VAIRAAEEGKHILLEKPIALTLEDGKEIIKAARKAGVKLMVPFNPRFTQPLRKAKEMIENNEIGRLEYIYAISEYVKPPM
FLEGLDTSWFFDVRKSGGGGFMDTAPHGIDSLFWLTESDPVEVYADIGAKIWGFKVDDIGTALIKFKNGVVTLLTAGWAN
PKGYPVGLEMKYYIVGDDGFLDIRTAYPDFTVYQDKTEKIYWERADIEGIINSFIDAIQQDKEPPITGEDALKNLAVVLA
AYESSKTGKTVKIEI

Sequences:

>Translated_335_residues
MVRFGIISYAHPHALRYAPVIKASRRAKLVAISGDGPNSGVAKLEAKKYGAKFYPTYEELLKDKTIEAVYIATETYKHKE
VAIRAAEEGKHILLEKPIALTLEDGKEIIKAARKAGVKLMVPFNPRFTQPLRKAKEMIENNEIGRLEYIYAISEYVKPPM
FLEGLDTSWFFDVRKSGGGGFMDTAPHGIDSLFWLTESDPVEVYADIGAKIWGFKVDDIGTALIKFKNGVVTLLTAGWAN
PKGYPVGLEMKYYIVGDDGFLDIRTAYPDFTVYQDKTEKIYWERADIEGIINSFIDAIQQDKEPPITGEDALKNLAVVLA
AYESSKTGKTVKIEI
>Mature_335_residues
MVRFGIISYAHPHALRYAPVIKASRRAKLVAISGDGPNSGVAKLEAKKYGAKFYPTYEELLKDKTIEAVYIATETYKHKE
VAIRAAEEGKHILLEKPIALTLEDGKEIIKAARKAGVKLMVPFNPRFTQPLRKAKEMIENNEIGRLEYIYAISEYVKPPM
FLEGLDTSWFFDVRKSGGGGFMDTAPHGIDSLFWLTESDPVEVYADIGAKIWGFKVDDIGTALIKFKNGVVTLLTAGWAN
PKGYPVGLEMKYYIVGDDGFLDIRTAYPDFTVYQDKTEKIYWERADIEGIINSFIDAIQQDKEPPITGEDALKNLAVVLA
AYESSKTGKTVKIEI

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87082405, Length=91, Percent_Identity=36.2637362637363, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081947, Length=238, Percent_Identity=25.6302521008403, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787574, Length=319, Percent_Identity=24.1379310344828, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37445; Mature: 37445

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRFGIISYAHPHALRYAPVIKASRRAKLVAISGDGPNSGVAKLEAKKYGAKFYPTYEEL
CEEEEEEEECCCCCEEECHHHHCCCCEEEEEEECCCCCCCCEEEEHHHCCCCCCCCHHHH
LKDKTIEAVYIATETYKHKEVAIRAAEEGKHILLEKPIALTLEDGKEIIKAARKAGVKLM
HCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEECCEEEEECCCHHHHHHHHHCCCEEE
VPFNPRFTQPLRKAKEMIENNEIGRLEYIYAISEYVKPPMFLEGLDTSWFFDVRKSGGGG
EECCCCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCEEEECCCCCEEEEEEECCCCC
FMDTAPHGIDSLFWLTESDPVEVYADIGAKIWGFKVDDIGTALIKFKNGVVTLLTAGWAN
CCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEEEHHHCEEEEEECCCEEEEEEECCCC
PKGYPVGLEMKYYIVGDDGFLDIRTAYPDFTVYQDKTEKIYWERADIEGIINSFIDAIQQ
CCCCEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHC
DKEPPITGEDALKNLAVVLAAYESSKTGKTVKIEI
CCCCCCCHHHHHHHHEEEEEEECCCCCCCEEEEEC
>Mature Secondary Structure
MVRFGIISYAHPHALRYAPVIKASRRAKLVAISGDGPNSGVAKLEAKKYGAKFYPTYEEL
CEEEEEEEECCCCCEEECHHHHCCCCEEEEEEECCCCCCCCEEEEHHHCCCCCCCCHHHH
LKDKTIEAVYIATETYKHKEVAIRAAEEGKHILLEKPIALTLEDGKEIIKAARKAGVKLM
HCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEECCEEEEECCCHHHHHHHHHCCCEEE
VPFNPRFTQPLRKAKEMIENNEIGRLEYIYAISEYVKPPMFLEGLDTSWFFDVRKSGGGG
EECCCCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCEEEECCCCCEEEEEEECCCCC
FMDTAPHGIDSLFWLTESDPVEVYADIGAKIWGFKVDDIGTALIKFKNGVVTLLTAGWAN
CCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEEEHHHCEEEEEECCCEEEEEEECCCC
PKGYPVGLEMKYYIVGDDGFLDIRTAYPDFTVYQDKTEKIYWERADIEGIINSFIDAIQQ
CCCCEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHC
DKEPPITGEDALKNLAVVLAAYESSKTGKTVKIEI
CCCCCCCHHHHHHHHEEEEEEECCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]