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The map label for this gene is 18978285

Identifier: 18978285

GI number: 18978285

Start: 1764306

End: 1764779

Strand: Direct

Name: 18978285

Synonym: PF1913

Alternate gene names: NA

Gene position: 1764306-1764779 (Clockwise)

Preceding gene: 18978284

Following gene: 18978286

Centisome position: 92.46

GC content: 38.82

Gene sequence:

>474_bases
ATGACAATGAAAGGGCGGTTGCAAGCTCATAACATTAGGATTAGAACATTCATCCACGCAACTGAGGATCCAGAGAAAGT
TCTTGAAGCATTGGAAACCTTATTCCCCGAAGATATATCGCCAAAGGATGTAGAGTTTGAAATTATAGAAACTGAAGGTT
ATTTCGGAAACCCCATATTGGTTCTTGATGCTGAGCTTAAGCATTCAAGAAATATAAGAAAATTTCTCGAAAATCTTAGG
AACCTCCTAAGCGAAGAAGACAAGAAATACTTGTTAGAGCACATAGAGGAAAAAGTAGACGAAACTGGAACATTCTACAT
TAGGTTCGATAAGCAAAAGGCCTATTTGGGAGAGGTAAAGGTCAGTGAAGGAGAGGATGTTATTCATTTAAGAATTAAGG
TCAAAGCATTTCCAATGAGGAAGGAAAGCGTTGTTGAAGCAGTGAAGAAATGGCTGGAGGGAGAAATGGAGTGA

Upstream 100 bases:

>100_bases
TTCGCTAGGGCAAAGGTAAATGGAGCCACTTCCACTTATCTTCTTGGCGAGATAGTAGACTAAACTTTTTAATCTTCAAA
TTCCAAATTTATTCTAGGGG

Downstream 100 bases:

>100_bases
AGTTTGTAGAGATGGACATTAGAAGCAGAGAAGCTTATGAACTTGCTGAGGAGTGGTTCGATGATGTTGTTTTTTCGTAT
GAAATCCCTCCAGGAGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTMKGRLQAHNIRIRTFIHATEDPEKVLEALETLFPEDISPKDVEFEIIETEGYFGNPILVLDAELKHSRNIRKFLENLR
NLLSEEDKKYLLEHIEEKVDETGTFYIRFDKQKAYLGEVKVSEGEDVIHLRIKVKAFPMRKESVVEAVKKWLEGEME

Sequences:

>Translated_157_residues
MTMKGRLQAHNIRIRTFIHATEDPEKVLEALETLFPEDISPKDVEFEIIETEGYFGNPILVLDAELKHSRNIRKFLENLR
NLLSEEDKKYLLEHIEEKVDETGTFYIRFDKQKAYLGEVKVSEGEDVIHLRIKVKAFPMRKESVVEAVKKWLEGEME
>Mature_156_residues
TMKGRLQAHNIRIRTFIHATEDPEKVLEALETLFPEDISPKDVEFEIIETEGYFGNPILVLDAELKHSRNIRKFLENLRN
LLSEEDKKYLLEHIEEKVDETGTFYIRFDKQKAYLGEVKVSEGEDVIHLRIKVKAFPMRKESVVEAVKKWLEGEME

Specific function: Unknown

COG id: COG1325

COG function: function code J; Predicted exosome subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022803
- InterPro:   IPR002739 [H]

Pfam domain/function: PF01877 DUF54 [H]

EC number: NA

Molecular weight: Translated: 18461; Mature: 18330

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMKGRLQAHNIRIRTFIHATEDPEKVLEALETLFPEDISPKDVEFEIIETEGYFGNPIL
CCCCCCEEECEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEE
VLDAELKHSRNIRKFLENLRNLLSEEDKKYLLEHIEEKVDETGTFYIRFDKQKAYLGEVK
EEECCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEECEEE
VSEGEDVIHLRIKVKAFPMRKESVVEAVKKWLEGEME
ECCCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TMKGRLQAHNIRIRTFIHATEDPEKVLEALETLFPEDISPKDVEFEIIETEGYFGNPIL
CCCCCEEECEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEE
VLDAELKHSRNIRKFLENLRNLLSEEDKKYLLEHIEEKVDETGTFYIRFDKQKAYLGEVK
EEECCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEECEEE
VSEGEDVIHLRIKVKAFPMRKESVVEAVKKWLEGEME
ECCCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]