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The map label for this gene is rpl30p [H]

Identifier: 18978175

GI number: 18978175

Start: 1673561

End: 1674028

Strand: Reverse

Name: rpl30p [H]

Synonym: PF1803

Alternate gene names: 18978175

Gene position: 1674028-1673561 (Counterclockwise)

Preceding gene: 18978176

Following gene: 161484705

Centisome position: 87.73

GC content: 43.8

Gene sequence:

>468_bases
ATGGCAAAATTAGCTGTAATTAGGATCAGGGGTAGAGTGAATGTTAAGAGGCCCGTGAGAGATACACTTGCAATGTTAAG
ACTTCATAGGGTAAATCACTGTGTTATAGTTGATGACACTCCCAGCTACCTGGGAATGCTCCAAAAGGCAAAGGATTACA
TAACTTGGGGAGAGATTAATGCAGAAACCCTAGCAAAGCTAATTAGAAAGAGAGGCAGGCTCATAGGGAACAAGCCAGTA
ACTGATGAGTATGTGAAAGAAAAGCTAGGAATGACAATCGAAGAATTTGCCCAAAAGGTCGTCAATGGCGAGATGAGCTT
GAAGGATCTTCCAAACCTTAAGCCAGTCTTCAGACTTCACCCACCAAGAGGTGGATTCAGGGGAAGCAAGAAGCGTTCCT
TCAAAGAAGGAGGGGCCCTGGGTTATCGTGGCGAGAAAATTAATGAACTAATTGAGAGAATGCTGTGA

Upstream 100 bases:

>100_bases
CCAACAGGGTAGCTATTAGCCCTGAGATGATTGAGAGATACGGTATCGTTGTTGGAAGAGCTATGCCAACAACGTTCACA
TTAGAATGAGGTGACTGAGA

Downstream 100 bases:

>100_bases
GGTGAAAGCGATGATAAGGAGAAGGAAGAAGGTCAGAAAGTTGAGAGGCAGTCACACTCACGGATGGGGATGTAAGAAGA
AGCACAGGGGAGGAGGTAGC

Product: 50S ribosomal protein L30P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGRLIGNKPV
TDEYVKEKLGMTIEEFAQKVVNGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERML

Sequences:

>Translated_155_residues
MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGRLIGNKPV
TDEYVKEKLGMTIEEFAQKVVNGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERML
>Mature_154_residues
AKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGRLIGNKPVT
DEYVKEKLGMTIEEFAQKVVNGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERML

Specific function: Unknown

COG id: COG1841

COG function: function code J; Ribosomal protein L30/L7E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30P family [H]

Homologues:

Organism=Homo sapiens, GI15431301, Length=161, Percent_Identity=35.4037267080745, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI50053872, Length=159, Percent_Identity=33.9622641509434, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17507559, Length=158, Percent_Identity=32.9113924050633, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321362, Length=158, Percent_Identity=30.379746835443, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6325058, Length=158, Percent_Identity=30.379746835443, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24583248, Length=164, Percent_Identity=33.5365853658537, Blast_Score=80, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005997
- InterPro:   IPR023106
- InterPro:   IPR018038
- InterPro:   IPR016082 [H]

Pfam domain/function: PF00327 Ribosomal_L30 [H]

EC number: NA

Molecular weight: Translated: 17710; Mature: 17579

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: PS00634 RIBOSOMAL_L30

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN
CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCC
AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVVNGEMSLKDLPNLKPVFRLH
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHCCCCCCCEEEEC
PPRGGFRGSKKRSFKEGGALGYRGEKINELIERML
CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHC
>Mature Secondary Structure 
AKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCC
AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVVNGEMSLKDLPNLKPVFRLH
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHCCCCCCCEEEEC
PPRGGFRGSKKRSFKEGGALGYRGEKINELIERML
CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]