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The map label for this gene is ychF [C]

Identifier: 18978135

GI number: 18978135

Start: 1640658

End: 1641821

Strand: Reverse

Name: ychF [C]

Synonym: PF1763

Alternate gene names: 18978135

Gene position: 1641821-1640658 (Counterclockwise)

Preceding gene: 18978137

Following gene: 18978130

Centisome position: 86.04

GC content: 42.1

Gene sequence:

>1164_bases
ATGCCAACGAACGTTACTGCTGAATATCTAGCAGCGGAAGAGGAATATAGGAATGCCAAGACTATTCCAGAGAAGATTCG
GGCACTTGAGAAAATGTATGCCTTAGTTCCAAAGCATAAAGGAACAGAAAAGCTTAGATTACAAATTAAACGAAAACTTG
CAGAGCTTAGGAAAGAGCTAGAAAAGCAGAGACAGCAGAGAAAGGGTGGAGGTTATTCTTTAGCTGTAAAAAAGGAGGGA
GCGGCTCAAATAGTGTTGGTTGGATTGCCGAATGTAGGCAAGTCTGAACTTTTAAAGGCCCTAACGGGAGTCGATGTTGA
GAGTGCTGATTATCCCTTCACAACAACTGAGCCTGTTCCAGCAATGTTGAATTATAAAGATGTTCAAATTCAGTTGGTAG
AAGTCCCTGGGCTAATTGAGGGGGCTGCCCTTGGTAAAGGAATGGGGCCTCAGCTTCTTGCAGTTGTTAGAAATGCCGAT
GCTATCGCCATTGTTGTGGATTTGAGCGAAGATCCAGTTCGTCAGATGAATATTCTCCTTCAAGAATTTGAAAGGGCGGG
AATTAAGGTCAACAAAAAGAAGCCAAAAGTTGAAATAAGGAAAACTCCAAGCGGTGGAATTGTGATTAATGGAATTGAGA
ACATTAAGGGAGATATTGATGAAGTCATGAAGATGTTAAGAGAGGAAAAGATACACTCTGCGGAGATAACAGTTATGGAA
CCAGTTACTCTTGAGGAGTTTGCTGATGCCTTAGATGATAGTCTTGTGTGGAAGAAGGCGATTATAATAGCAAACAAGGG
AGATGCCCCTGGGAGCAGAGCAAATTACGAAAAATTAGTGAAAGCATTTGGAGAAAGGTTTAAAATAATTCCAGTTTCCG
CCAAGAAGAGAATAAACTTGGAGGCGGTGAAGGAGGCCATATATGAAATTGCAGATATAATTAGGGTGTTCACAAAAAGC
CCAGGGGAAGAGCCAGCTTATCCACCCATTGCTTTGAGAAAAGGTGCAACAGTCCAGGATGTTGCTGAGAGGATTCATAA
AGATTTAGTGAAAAACTTCAAATACGCGAGAGTGTGGGGGAAGAGTGTAAAGTTCCCAGGGCAGAGGGTTGGATTAGACC
ATGTTTTGGAAGATGGGGATATAGTGGAAATTCACGCGAGATAA

Upstream 100 bases:

>100_bases
CCCAGGAATATAATAACAAAAGCTTACTATAAACTTTTCGTGGTTAGCTTTATAAAAGTTCTAATTTTCTATCTTTTAGA
AGTTCTGAGGGTGTTCAGCA

Downstream 100 bases:

>100_bases
CTATCTTCCTCTCCATTGTTTTGTTCTAATTTCCCTTAGCTTTTTCTTAGCTTTGTTTATGTATTGGATTGCCTCAGCTA
TTCTACCAGCTTTTAGGGCT

Product: gtp1/obg family GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEG
AAQIVLVGLPNVGKSELLKALTGVDVESADYPFTTTEPVPAMLNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVVRNAD
AIAIVVDLSEDPVRQMNILLQEFERAGIKVNKKKPKVEIRKTPSGGIVINGIENIKGDIDEVMKMLREEKIHSAEITVME
PVTLEEFADALDDSLVWKKAIIIANKGDAPGSRANYEKLVKAFGERFKIIPVSAKKRINLEAVKEAIYEIADIIRVFTKS
PGEEPAYPPIALRKGATVQDVAERIHKDLVKNFKYARVWGKSVKFPGQRVGLDHVLEDGDIVEIHAR

Sequences:

>Translated_387_residues
MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEG
AAQIVLVGLPNVGKSELLKALTGVDVESADYPFTTTEPVPAMLNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVVRNAD
AIAIVVDLSEDPVRQMNILLQEFERAGIKVNKKKPKVEIRKTPSGGIVINGIENIKGDIDEVMKMLREEKIHSAEITVME
PVTLEEFADALDDSLVWKKAIIIANKGDAPGSRANYEKLVKAFGERFKIIPVSAKKRINLEAVKEAIYEIADIIRVFTKS
PGEEPAYPPIALRKGATVQDVAERIHKDLVKNFKYARVWGKSVKFPGQRVGLDHVLEDGDIVEIHAR
>Mature_386_residues
PTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKELEKQRQQRKGGGYSLAVKKEGA
AQIVLVGLPNVGKSELLKALTGVDVESADYPFTTTEPVPAMLNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVVRNADA
IAIVVDLSEDPVRQMNILLQEFERAGIKVNKKKPKVEIRKTPSGGIVINGIENIKGDIDEVMKMLREEKIHSAEITVMEP
VTLEEFADALDDSLVWKKAIIIANKGDAPGSRANYEKLVKAFGERFKIIPVSAKKRINLEAVKEAIYEIADIIRVFTKSP
GEEPAYPPIALRKGATVQDVAERIHKDLVKNFKYARVWGKSVKFPGQRVGLDHVLEDGDIVEIHAR

Specific function: Unknown

COG id: COG1163

COG function: function code R; Predicted GTPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI4557537, Length=365, Percent_Identity=36.1643835616438, Blast_Score=228, Evalue=7e-60,
Organism=Homo sapiens, GI4758796, Length=364, Percent_Identity=37.9120879120879, Blast_Score=211, Evalue=8e-55,
Organism=Homo sapiens, GI111955139, Length=89, Percent_Identity=42.6966292134831, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI24308117, Length=105, Percent_Identity=37.1428571428571, Blast_Score=72, Evalue=7e-13,
Organism=Escherichia coli, GI1787454, Length=103, Percent_Identity=35.9223300970874, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789574, Length=111, Percent_Identity=35.1351351351351, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71981008, Length=371, Percent_Identity=33.4231805929919, Blast_Score=215, Evalue=4e-56,
Organism=Caenorhabditis elegans, GI17555344, Length=368, Percent_Identity=36.9565217391304, Blast_Score=209, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI17508313, Length=229, Percent_Identity=27.0742358078603, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17552324, Length=188, Percent_Identity=29.7872340425532, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6319281, Length=373, Percent_Identity=35.9249329758713, Blast_Score=208, Evalue=1e-54,
Organism=Saccharomyces cerevisiae, GI6321612, Length=372, Percent_Identity=35.2150537634409, Blast_Score=204, Evalue=2e-53,
Organism=Saccharomyces cerevisiae, GI6321962, Length=104, Percent_Identity=31.7307692307692, Blast_Score=66, Evalue=8e-12,
Organism=Drosophila melanogaster, GI21356473, Length=366, Percent_Identity=36.8852459016393, Blast_Score=231, Evalue=8e-61,
Organism=Drosophila melanogaster, GI17981711, Length=371, Percent_Identity=36.9272237196765, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24585318, Length=88, Percent_Identity=40.9090909090909, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI20129375, Length=122, Percent_Identity=33.6065573770492, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006074
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR005225
- InterPro:   IPR004095 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 42978; Mature: 42846

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKEL
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
EKQRQQRKGGGYSLAVKKEGAAQIVLVGLPNVGKSELLKALTGVDVESADYPFTTTEPVP
HHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
AMLNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVVRNADAIAIVVDLSEDPVRQMNILL
HHCCCCEEEEEEEECCCCHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHH
QEFERAGIKVNKKKPKVEIRKTPSGGIVINGIENIKGDIDEVMKMLREEKIHSAEITVME
HHHHHCCCEEECCCCCEEEEECCCCCEEEECHHHCCCCHHHHHHHHHHHCCCCCEEEEEC
PVTLEEFADALDDSLVWKKAIIIANKGDAPGSRANYEKLVKAFGERFKIIPVSAKKRINL
CCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCH
EAVKEAIYEIADIIRVFTKSPGEEPAYPPIALRKGATVQDVAERIHKDLVKNFKYARVWG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHC
KSVKFPGQRVGLDHVLEDGDIVEIHAR
CCCCCCCHHCCHHHHCCCCCEEEEECC
>Mature Secondary Structure 
PTNVTAEYLAAEEEYRNAKTIPEKIRALEKMYALVPKHKGTEKLRLQIKRKLAELRKEL
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
EKQRQQRKGGGYSLAVKKEGAAQIVLVGLPNVGKSELLKALTGVDVESADYPFTTTEPVP
HHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
AMLNYKDVQIQLVEVPGLIEGAALGKGMGPQLLAVVRNADAIAIVVDLSEDPVRQMNILL
HHCCCCEEEEEEEECCCCHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHH
QEFERAGIKVNKKKPKVEIRKTPSGGIVINGIENIKGDIDEVMKMLREEKIHSAEITVME
HHHHHCCCEEECCCCCEEEEECCCCCEEEECHHHCCCCHHHHHHHHHHHCCCCCEEEEEC
PVTLEEFADALDDSLVWKKAIIIANKGDAPGSRANYEKLVKAFGERFKIIPVSAKKRINL
CCCHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCH
EAVKEAIYEIADIIRVFTKSPGEEPAYPPIALRKGATVQDVAERIHKDLVKNFKYARVWG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHC
KSVKFPGQRVGLDHVLEDGDIVEIHAR
CCCCCCCHHCCHHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]