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The map label for this gene is rpoK [H]

Identifier: 18978014

GI number: 18978014

Start: 1532854

End: 1533027

Strand: Reverse

Name: rpoK [H]

Synonym: PF1642

Alternate gene names: 18978014

Gene position: 1533027-1532854 (Counterclockwise)

Preceding gene: 18978015

Following gene: 18978013

Centisome position: 80.34

GC content: 45.98

Gene sequence:

>174_bases
ATGTTCAAGTATACGAGGTTTGAGAAAGCTAGGATTATAGGAGCAAGAGCCCTTCAAATTTCCATGGGAGCACCCGTCCT
CATAGACGTGCCTCCGGGAATAACACCGCTTGAAGCAGCTATCTTGGAGTTTGAAAAGGGTGTAATCCCAATAACAGTAA
TCAGACCGAGCTGA

Upstream 100 bases:

>100_bases
GGGCCGTGGGGTAGCTTGGCTATCCTCCCGGCCTGGGGCGCCGGAGACCCGGGTTCAAATCCCGGCGGCCCCACCAAAAT
ATCGCAAAGGTGATGAGTAC

Downstream 100 bases:

>100_bases
TGGAAGATGAGCATTATTCAAGATATAATTGGGAGAATTGTCGTTTTAAGGGGAGGACAATACTCTGTAGAAGTTGACGT
TGTTACTGATGAAAGTTTTG

Product: DNA-directed RNA polymerase subunit K

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 57; Mature: 57

Protein sequence:

>57_residues
MFKYTRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIRPS

Sequences:

>Translated_57_residues
MFKYTRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIRPS
>Mature_57_residues
MFKYTRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIRPS

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoK/eukaryotic RPB6 RNA polymerase subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020708
- InterPro:   IPR006111
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 6237; Mature: 6237

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS01111 RNA_POL_K_14KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKYTRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIRPS
CCCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEECC
>Mature Secondary Structure
MFKYTRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIRPS
CCCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]