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The map label for this gene is 18978010

Identifier: 18978010

GI number: 18978010

Start: 1529201

End: 1530079

Strand: Reverse

Name: 18978010

Synonym: PF1638

Alternate gene names: NA

Gene position: 1530079-1529201 (Counterclockwise)

Preceding gene: 18978011

Following gene: 18978009

Centisome position: 80.18

GC content: 43.69

Gene sequence:

>879_bases
ATGATAAGGCGTGCTGTTGTTGCAGGGCAGTTTTATCCAGATGATGCAGAGCTTGTGGAAATGCTCAAAAGGTTCTTCAC
TGATTTAGGGGAGGAAGGAAACTCAAGGAGAATCACCGCAGGTGTTGCTCCTCATGCGGGCTACATATTCTCAGGCTACA
CCGCTTCTAGAACATACAAGGCCATATATGAGGATGGTCTTCCAGAGGTCTTTGTGATACTTGGCCCAAATCATACTGGA
CTTGGTTCGCCCATCGCTGTCTATCCAAAAGGTGAGTGGGAAACTCCGCTAGGGAGAATAAAGGTTGATGAAAAGCTGGC
AAGGAGAATCACTGAACTTTCCGAGATAGCAGATTTAGATGACTTAGCTCACAAATACGAGCACTCCATAGAAGTCCAAC
TTCCATTTATACAGTATTTGGCAGAACTTTCCGGAAAAGATGTTAAGATAGTTCCAATAACCCTAGGAATACAAGATGAA
GAAGTATCTTATGCACTAGGAAAAGCAATTTACGAGGCTTCCCAGGAGCTTGGAAGAGATATTGTGGTTATAGCAAGCAC
TGACTTTATGCACTATGGAGAATTTTATGGCTACGTTCCGTTCAGGGCTAGAGCTGATGAATTACCCAACCTAGTAAAGG
AGTGGGATATGAGAGTAATTAGAAGGATACTTGACTTTGATGTAGAGGGAATGTTTGAGGAAATAAATGCTATGAATCAT
ACCATGTGCGGCCCAGGTGGAGTAGGAGTTGGAATAGTCTACTCTAAGCTTGCTGGGGCAATTGAAGCAGAGCTTCTTCA
CTACACTACGAGCTTTGAAGTTAGTCGGAGCACAGATGCAATAGTGGGATACGCTAGCATAGTAATGAGGAAGGCTTGA

Upstream 100 bases:

>100_bases
CCTTCGTAGTCCCACTTACCGGAAGTGGTCTTAAACTTCACAGTTCCTTCTGAAGAAATCGTTAAAATATCTCGCATAAC
AATATTTTTTGGTGAGAAAG

Downstream 100 bases:

>100_bases
GGGGGTTAAGATGAAAGTTATAGCCTCAGCTCCCGCAAAAGTTATTCTTTTTGGAGAGCATAGCGTAGTTTACGGAAAGC
CAGCGATAGCTGCTGCCATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MIRRAVVAGQFYPDDAELVEMLKRFFTDLGEEGNSRRITAGVAPHAGYIFSGYTASRTYKAIYEDGLPEVFVILGPNHTG
LGSPIAVYPKGEWETPLGRIKVDEKLARRITELSEIADLDDLAHKYEHSIEVQLPFIQYLAELSGKDVKIVPITLGIQDE
EVSYALGKAIYEASQELGRDIVVIASTDFMHYGEFYGYVPFRARADELPNLVKEWDMRVIRRILDFDVEGMFEEINAMNH
TMCGPGGVGVGIVYSKLAGAIEAELLHYTTSFEVSRSTDAIVGYASIVMRKA

Sequences:

>Translated_292_residues
MIRRAVVAGQFYPDDAELVEMLKRFFTDLGEEGNSRRITAGVAPHAGYIFSGYTASRTYKAIYEDGLPEVFVILGPNHTG
LGSPIAVYPKGEWETPLGRIKVDEKLARRITELSEIADLDDLAHKYEHSIEVQLPFIQYLAELSGKDVKIVPITLGIQDE
EVSYALGKAIYEASQELGRDIVVIASTDFMHYGEFYGYVPFRARADELPNLVKEWDMRVIRRILDFDVEGMFEEINAMNH
TMCGPGGVGVGIVYSKLAGAIEAELLHYTTSFEVSRSTDAIVGYASIVMRKA
>Mature_292_residues
MIRRAVVAGQFYPDDAELVEMLKRFFTDLGEEGNSRRITAGVAPHAGYIFSGYTASRTYKAIYEDGLPEVFVILGPNHTG
LGSPIAVYPKGEWETPLGRIKVDEKLARRITELSEIADLDDLAHKYEHSIEVQLPFIQYLAELSGKDVKIVPITLGIQDE
EVSYALGKAIYEASQELGRDIVVIASTDFMHYGEFYGYVPFRARADELPNLVKEWDMRVIRRILDFDVEGMFEEINAMNH
TMCGPGGVGVGIVYSKLAGAIEAELLHYTTSFEVSRSTDAIVGYASIVMRKA

Specific function: Unknown

COG id: COG1355

COG function: function code R; Predicted dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0103 family

Homologues:

Organism=Homo sapiens, GI7705720, Length=291, Percent_Identity=24.0549828178694, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25146594, Length=286, Percent_Identity=28.6713286713287, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI32566861, Length=286, Percent_Identity=28.6713286713287, Blast_Score=94, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6322467, Length=335, Percent_Identity=26.2686567164179, Blast_Score=84, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21357419, Length=296, Percent_Identity=28.3783783783784, Blast_Score=102, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1638_PYRFU (Q8U0F2)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_579367.1
- ProteinModelPortal:   Q8U0F2
- SMR:   Q8U0F2
- EnsemblBacteria:   EBPYRT00000004536
- GeneID:   1469515
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF1638
- NMPDR:   fig|186497.1.peg.1686
- GeneTree:   EBGT00050000022792
- HOGENOM:   HBG575564
- OMA:   GPNHTGY
- ProtClustDB:   PRK00782
- HAMAP:   MF_00055
- InterPro:   IPR020619
- InterPro:   IPR002737
- InterPro:   IPR004183
- PANTHER:   PTHR11060

Pfam domain/function: PF01875 Memo; SSF53213 Xdiol_dOase_3B

EC number: NA

Molecular weight: Translated: 32543; Mature: 32543

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRAVVAGQFYPDDAELVEMLKRFFTDLGEEGNSRRITAGVAPHAGYIFSGYTASRTYK
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCHHHHHH
AIYEDGLPEVFVILGPNHTGLGSPIAVYPKGEWETPLGRIKVDEKLARRITELSEIADLD
HHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHH
DLAHKYEHSIEVQLPFIQYLAELSGKDVKIVPITLGIQDEEVSYALGKAIYEASQELGRD
HHHHHHCCCEEEEEHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCE
IVVIASTDFMHYGEFYGYVPFRARADELPNLVKEWDMRVIRRILDFDVEGMFEEINAMNH
EEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
TMCGPGGVGVGIVYSKLAGAIEAELLHYTTSFEVSRSTDAIVGYASIVMRKA
CCCCCCCCHHHHHHHHHHHHHHHHHHHEEECEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIRRAVVAGQFYPDDAELVEMLKRFFTDLGEEGNSRRITAGVAPHAGYIFSGYTASRTYK
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCHHHHHH
AIYEDGLPEVFVILGPNHTGLGSPIAVYPKGEWETPLGRIKVDEKLARRITELSEIADLD
HHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHH
DLAHKYEHSIEVQLPFIQYLAELSGKDVKIVPITLGIQDEEVSYALGKAIYEASQELGRD
HHHHHHCCCEEEEEHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCE
IVVIASTDFMHYGEFYGYVPFRARADELPNLVKEWDMRVIRRILDFDVEGMFEEINAMNH
EEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
TMCGPGGVGVGIVYSKLAGAIEAELLHYTTSFEVSRSTDAIVGYASIVMRKA
CCCCCCCCHHHHHHHHHHHHHHHHHHHEEECEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA