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The map label for this gene is 18977487

Identifier: 18977487

GI number: 18977487

Start: 1063124

End: 1063642

Strand: Direct

Name: 18977487

Synonym: PF1115

Alternate gene names: NA

Gene position: 1063124-1063642 (Clockwise)

Preceding gene: 18977486

Following gene: 18977488

Centisome position: 55.71

GC content: 43.93

Gene sequence:

>519_bases
ATGGAGCTCAAGATAAAGCACCCCCTAAGCAAGAAGGATGTTAAAGAGATAATCAACGTCCTCTCTCAGATGTTTGGAGA
GGAAATTGCAAGCAAGATGCTCACAAAGAAAGATGAGGTTAAGGTTGCGGAGTTCGATAAGACCACAGAGATAATCTTGG
TAAATGACAGGCCGATGTTCATAAAGAGAAAAGACCTAATTTTCCCCTTGGTAATAGCTCTTTACGAGCTCTCTGATAAG
GAAGATCTTAGGAAGTGGCCCAAGAGAGTAGTTGTGGATGAGGGAGCTGTGCCTCATATCCTAAATGGTGCAGATGTTAT
GGCCCCTGGGATTGTCGATGCAGATGAGAACATAAAAGAGGGTGACTTCGTATTTGTAGTTGAGGAAAACTACGGAAGAC
CTCTAGCCATTGGAATAGCACTCATGAGTGGAAAAGCAATGAAAGAGAAGAACAGGGGAAAGGCAGTGAAAGTCATCCAC
CACGCGAGGGATAAGATATGGGAGATAACCGCAAGGTAA

Upstream 100 bases:

>100_bases
CGTTGAAAGCTGGAGCAGATTACATCATCATTGGAAGGGCCATATACAATGCTGAAAGGCCCAGGGAAGCCGCTAAGAAG
ATTTTCGAGGAGGTGAAAGA

Downstream 100 bases:

>100_bases
GGGTTGTGGTGGGAGGTGTTTTCGACATCCTCCACGTCGGCCATGTCCACTTTTTGAAGATGGCTAAGGAGTTGGGTGAT
GAGTTAATAGTTATTGTTGC

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MELKIKHPLSKKDVKEIINVLSQMFGEEIASKMLTKKDEVKVAEFDKTTEIILVNDRPMFIKRKDLIFPLVIALYELSDK
EDLRKWPKRVVVDEGAVPHILNGADVMAPGIVDADENIKEGDFVFVVEENYGRPLAIGIALMSGKAMKEKNRGKAVKVIH
HARDKIWEITAR

Sequences:

>Translated_172_residues
MELKIKHPLSKKDVKEIINVLSQMFGEEIASKMLTKKDEVKVAEFDKTTEIILVNDRPMFIKRKDLIFPLVIALYELSDK
EDLRKWPKRVVVDEGAVPHILNGADVMAPGIVDADENIKEGDFVFVVEENYGRPLAIGIALMSGKAMKEKNRGKAVKVIH
HARDKIWEITAR
>Mature_172_residues
MELKIKHPLSKKDVKEIINVLSQMFGEEIASKMLTKKDEVKVAEFDKTTEIILVNDRPMFIKRKDLIFPLVIALYELSDK
EDLRKWPKRVVVDEGAVPHILNGADVMAPGIVDADENIKEGDFVFVVEENYGRPLAIGIALMSGKAMKEKNRGKAVKVIH
HARDKIWEITAR

Specific function: Unknown

COG id: COG2016

COG function: function code J; Predicted RNA-binding protein (contains PUA domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320844, Length=150, Percent_Identity=24.6666666666667, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022430
- InterPro:   IPR015266
- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR016437
- InterPro:   IPR004521 [H]

Pfam domain/function: PF01472 PUA [H]

EC number: NA

Molecular weight: Translated: 19548; Mature: 19548

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKIKHPLSKKDVKEIINVLSQMFGEEIASKMLTKKDEVKVAEFDKTTEIILVNDRPMF
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCE
IKRKDLIFPLVIALYELSDKEDLRKWPKRVVVDEGAVPHILNGADVMAPGIVDADENIKE
EEHHHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCCEECCCCCCCCCCCCCCCCCCC
GDFVFVVEENYGRPLAIGIALMSGKAMKEKNRGKAVKVIHHARDKIWEITAR
CCEEEEEECCCCCEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MELKIKHPLSKKDVKEIINVLSQMFGEEIASKMLTKKDEVKVAEFDKTTEIILVNDRPMF
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCE
IKRKDLIFPLVIALYELSDKEDLRKWPKRVVVDEGAVPHILNGADVMAPGIVDADENIKE
EEHHHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCCEECCCCCCCCCCCCCCCCCCC
GDFVFVVEENYGRPLAIGIALMSGKAMKEKNRGKAVKVIHHARDKIWEITAR
CCEEEEEECCCCCEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]