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The map label for this gene is 18977473

Identifier: 18977473

GI number: 18977473

Start: 1048214

End: 1049533

Strand: Direct

Name: 18977473

Synonym: PF1101

Alternate gene names: NA

Gene position: 1048214-1049533 (Clockwise)

Preceding gene: 18977472

Following gene: 18977474

Centisome position: 54.93

GC content: 45.3

Gene sequence:

>1320_bases
ATGATAAAAATCTACACTCTCGGGGGTTACGAGGAAGTCGGAAAGAACATGACTGCTGTTGAATACGAAGGGGAGATAGT
GATAATAGACATGGGAATAAGGCTCGACAGGGTTTTGATTCACGAAGACGTTGAGTTCCAGAAGATGAGCTCAAAAGAGC
TAAGGAAGCTTGGAGCAATACCGGACGACAGGCCAATCAGGGATAAGAAAGTGGTTGCAATAGCACTCTCCCACGGGCAC
TTGGATCACATAGGGGCAGTGGGAAAGCTAGCCCCCCACTATCCTGACGTTCCAATATATGGAACCCCCTACACGATTAG
GTTAGCGAAGAGCGAAATAAAGGGAGAAGAGTATTTTGAGGTCACAAACCCACTCTATGAGACCAATTATGGGGAGATTG
TCCAAGTAAGCGAGAATCTGGCCATAGAATTTGTCCAGATAACCCATTCAATTCCTCACTCTTCGATAGTTGTAATCCAC
ACCCCAGAGGGAGCTGTCGTTTACGCTTGCGACTACAAATTTGACAACAATCACCCCTACGGGGAGAAACCCGACTACAA
AAGGCTAAAAGAGCTTGGAAAAGAAGGAGTTAAGGTTTTAATAGCTGAATCAACGAGGGTCGCTGAAGAAACAAAAACTC
CAAGCGAGGCCGTTGCGAAGATGCTCCTCGAAGACTTCTTCCTATATGAGGGGATGGAGGCCGATGGACTTATAGCTACA
ACCTTTGCGAGCCACATAACGAGGCTTCAAGCGCTGATAGAGATAGCAAATAAGATGGGAAGGCAAGCTGTATTCATAGG
AAGGTCTCTAGCCAAGTATACTGGAATAGCAAAGCAGTTGGGCTTGATAAAGATGAAAGGTTCCAGAGTTTTGAGGAGCC
CAAATGCAATAAGCAAGGTTTTAAAGGAAGTTTCACAGGCGAGAGAAAATTATCTTCTCGTGGTAACTGGTCATCAGGGT
GAGCCGGGGGCAATACTAACAAGAATGGCTAACGGAGAGCTCTATGATATAGGGCCGAGGGATACAGTTGTCTTTTCGGC
AGGAGTCATACCGAACCCCTTAAATATAGCTCAGAGGTATGCCCTAGAGACAAAGTTAAGGATGAAAGGGGTAAGAATGA
TAAAGAATTTGCACGTAAGTGGTCATGCAAGCAAGGAGGATCACAGGTATTTAATAAGGATGCTCAACCCAGAGAACATA
GTTCCCGCGCATGGGGAGTTCAGGATGCTCACGCACTATGCAGAATTGGCAGAAGAGGAAGGATATATGATTGGCAAGGA
TGTTTTCATTTCAAGAAACGGTCATGCAATAACAATTTAG

Upstream 100 bases:

>100_bases
GTGAAACTTTTTCTCCCACATCTTTTTAAACCAAAACTCAAACAACAATTCAGTTCTTCCCCGTGCCCAAGTGGCTCGGG
GAGATAAGGGAGGAGAGAGC

Downstream 100 bases:

>100_bases
GGGGGTGAATTAGATGTATGATGAGCTTTTTAAAAAGATAAAGGAGAAGGCTAAGTTTGTTGATGAAAAACTGCTCTCTC
TAATCCCTGAAAAGGAACCA

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MIKIYTLGGYEEVGKNMTAVEYEGEIVIIDMGIRLDRVLIHEDVEFQKMSSKELRKLGAIPDDRPIRDKKVVAIALSHGH
LDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPHSSIVVIH
TPEGAVVYACDYKFDNNHPYGEKPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIAT
TFASHITRLQALIEIANKMGRQAVFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAISKVLKEVSQARENYLLVVTGHQG
EPGAILTRMANGELYDIGPRDTVVFSAGVIPNPLNIAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPENI
VPAHGEFRMLTHYAELAEEEGYMIGKDVFISRNGHAITI

Sequences:

>Translated_439_residues
MIKIYTLGGYEEVGKNMTAVEYEGEIVIIDMGIRLDRVLIHEDVEFQKMSSKELRKLGAIPDDRPIRDKKVVAIALSHGH
LDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPHSSIVVIH
TPEGAVVYACDYKFDNNHPYGEKPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIAT
TFASHITRLQALIEIANKMGRQAVFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAISKVLKEVSQARENYLLVVTGHQG
EPGAILTRMANGELYDIGPRDTVVFSAGVIPNPLNIAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPENI
VPAHGEFRMLTHYAELAEEEGYMIGKDVFISRNGHAITI
>Mature_439_residues
MIKIYTLGGYEEVGKNMTAVEYEGEIVIIDMGIRLDRVLIHEDVEFQKMSSKELRKLGAIPDDRPIRDKKVVAIALSHGH
LDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPHSSIVVIH
TPEGAVVYACDYKFDNNHPYGEKPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIAT
TFASHITRLQALIEIANKMGRQAVFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAISKVLKEVSQARENYLLVVTGHQG
EPGAILTRMANGELYDIGPRDTVVFSAGVIPNPLNIAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPENI
VPAHGEFRMLTHYAELAEEEGYMIGKDVFISRNGHAITI

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 49080; Mature: 49080

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKIYTLGGYEEVGKNMTAVEYEGEIVIIDMGIRLDRVLIHEDVEFQKMSSKELRKLGAI
CEEEEEECCHHHHCCCCEEEEECCCEEEEECCCCEEEEEEECCCHHHHHCHHHHHHHCCC
PDDRPIRDKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYFE
CCCCCCCCCEEEEEEECCCCHHHHCCHHCCCCCCCCCCCCCCCEEEEEEHHHCCCCHHEE
VTNPLYETNYGEIVQVSENLAIEFVQITHSIPHSSIVVIHTPEGAVVYACDYKFDNNHPY
ECCCHHCCCCCCEEEECCCCEEEEEEEECCCCCCCEEEEECCCCCEEEEEEEEECCCCCC
GEKPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIAT
CCCCCHHHHHHHCCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHH
TFASHITRLQALIEIANKMGRQAVFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAISKV
HHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCEEEECCCHHCCCCHHHHHH
LKEVSQARENYLLVVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPLNIAQRY
HHHHHHHHCCEEEEEECCCCCCCCEEEEECCCCEEECCCCCEEEEECCCCCCCHHHHHHH
ALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPENIVPAHGEFRMLTHYAELAEEE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
GYMIGKDVFISRNGHAITI
CCEEECEEEEECCCCEEEC
>Mature Secondary Structure
MIKIYTLGGYEEVGKNMTAVEYEGEIVIIDMGIRLDRVLIHEDVEFQKMSSKELRKLGAI
CEEEEEECCHHHHCCCCEEEEECCCEEEEECCCCEEEEEEECCCHHHHHCHHHHHHHCCC
PDDRPIRDKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYFE
CCCCCCCCCEEEEEEECCCCHHHHCCHHCCCCCCCCCCCCCCCEEEEEEHHHCCCCHHEE
VTNPLYETNYGEIVQVSENLAIEFVQITHSIPHSSIVVIHTPEGAVVYACDYKFDNNHPY
ECCCHHCCCCCCEEEECCCCEEEEEEEECCCCCCCEEEEECCCCCEEEEEEEEECCCCCC
GEKPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIAT
CCCCCHHHHHHHCCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHH
TFASHITRLQALIEIANKMGRQAVFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAISKV
HHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCEEEECCCHHCCCCHHHHHH
LKEVSQARENYLLVVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPLNIAQRY
HHHHHHHHCCEEEEEECCCCCCCCEEEEECCCCEEECCCCCEEEEECCCCCCCHHHHHHH
ALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPENIVPAHGEFRMLTHYAELAEEE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
GYMIGKDVFISRNGHAITI
CCEEECEEEEECCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]