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The map label for this gene is ygeA [C]

Identifier: 18977352

GI number: 18977352

Start: 936677

End: 937363

Strand: Direct

Name: ygeA [C]

Synonym: PF0980

Alternate gene names: 18977352

Gene position: 936677-937363 (Clockwise)

Preceding gene: 18977351

Following gene: 18977353

Centisome position: 49.09

GC content: 40.76

Gene sequence:

>687_bases
ATGAAGGTCATAGGAATATTAGGAGGGATGGGCCCTTTAGCTACGGTGGAGCTTTTTAAGAGGATTGTGGAAAAAACACC
CGCTAAGAGGGATCAGGATCATCCCAAAATAATCATTTACAATAATCCCCAAATTCCAGATAGAACAGCCTACATTTTAG
GAAGGGGAGAAGATCCAAGACCACAACTCATATGGACGGCTAAAAAATTGGAAAAATGTGGAGCAGATTTCATAGTAATG
CCTTGCAATACTGCCCATGCCTTTATTGATGACATTAGGAGGGAAGTTGGCATTCCAGTGATAAGTATGATTGAAGAGAC
TGCAAAGAGAATAGCCTCCCTGGGAATAAAGAAGGCAGGTTTACTAGCCACCACAGGGACTATAGTAAGTGGTGTGTACC
ACAAAGAGCTCGAGAAGTATGGACTTGAAATTCTAACTCCCACTGAAGAAGAACAAGAGTTAGTCATGAAGGGGATTTAC
GAAGGCGTAAAAGCTGGTAATTTAGATCTTGGAAGAAACCTTCTTCTTCAAATTGCGAGGATTTTAGAAGAGAGAGGGGC
AGAGGCAATAATTGCGGGATGTACAGAAGTTAGTGTAGTTATAAAAGAAAGCGACCTTAGAGTTATGCTGATAGATCCTA
TGAATGTTATAGCAGAAGTTGCAGTAAAGATGGCATTAGAAGAATGA

Upstream 100 bases:

>100_bases
GAAAGCTATCTCTCATTTATGTAAATAGACTAAGTGACCTCCTATATTTAATGGCTAGGTATATCGAAATTAAAGAAGGA
AAGCTGAGGGAGGTAAAGAG

Downstream 100 bases:

>100_bases
GGATGGTGGGGGCGCGGGGATTTGAACCCCGGTCCGCGGGTTTCTCCGGCCCTCGGGGCTCCAAAGGTTCATCACGCCCC
GAGGTCAGCAAACCCGCCTA

Product: putative aspartate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKVIGILGGMGPLATVELFKRIVEKTPAKRDQDHPKIIIYNNPQIPDRTAYILGRGEDPRPQLIWTAKKLEKCGADFIVM
PCNTAHAFIDDIRREVGIPVISMIEETAKRIASLGIKKAGLLATTGTIVSGVYHKELEKYGLEILTPTEEEQELVMKGIY
EGVKAGNLDLGRNLLLQIARILEERGAEAIIAGCTEVSVVIKESDLRVMLIDPMNVIAEVAVKMALEE

Sequences:

>Translated_228_residues
MKVIGILGGMGPLATVELFKRIVEKTPAKRDQDHPKIIIYNNPQIPDRTAYILGRGEDPRPQLIWTAKKLEKCGADFIVM
PCNTAHAFIDDIRREVGIPVISMIEETAKRIASLGIKKAGLLATTGTIVSGVYHKELEKYGLEILTPTEEEQELVMKGIY
EGVKAGNLDLGRNLLLQIARILEERGAEAIIAGCTEVSVVIKESDLRVMLIDPMNVIAEVAVKMALEE
>Mature_228_residues
MKVIGILGGMGPLATVELFKRIVEKTPAKRDQDHPKIIIYNNPQIPDRTAYILGRGEDPRPQLIWTAKKLEKCGADFIVM
PCNTAHAFIDDIRREVGIPVISMIEETAKRIASLGIKKAGLLATTGTIVSGVYHKELEKYGLEILTPTEEEQELVMKGIY
EGVKAGNLDLGRNLLLQIARILEERGAEAIIAGCTEVSVVIKESDLRVMLIDPMNVIAEVAVKMALEE

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=230, Percent_Identity=26.9565217391304, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: =5.1.1.13 [H]

Molecular weight: Translated: 25113; Mature: 25113

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIGILGGMGPLATVELFKRIVEKTPAKRDQDHPKIIIYNNPQIPDRTAYILGRGEDPR
CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCC
PQLIWTAKKLEKCGADFIVMPCNTAHAFIDDIRREVGIPVISMIEETAKRIASLGIKKAG
CCEEEEHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
LLATTGTIVSGVYHKELEKYGLEILTPTEEEQELVMKGIYEGVKAGNLDLGRNLLLQIAR
CEEEHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ILEERGAEAIIAGCTEVSVVIKESDLRVMLIDPMNVIAEVAVKMALEE
HHHHCCCCEEEECCCEEEEEEEECCCEEEEECHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKVIGILGGMGPLATVELFKRIVEKTPAKRDQDHPKIIIYNNPQIPDRTAYILGRGEDPR
CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCC
PQLIWTAKKLEKCGADFIVMPCNTAHAFIDDIRREVGIPVISMIEETAKRIASLGIKKAG
CCEEEEHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
LLATTGTIVSGVYHKELEKYGLEILTPTEEEQELVMKGIYEGVKAGNLDLGRNLLLQIAR
CEEEHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ILEERGAEAIIAGCTEVSVVIKESDLRVMLIDPMNVIAEVAVKMALEE
HHHHCCCCEEEECCCEEEEEEEECCCEEEEECHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2054383; 1907199 [H]