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The map label for this gene is gcdB [H]

Identifier: 18977046

GI number: 18977046

Start: 684200

End: 685402

Strand: Direct

Name: gcdB [H]

Synonym: PF0674

Alternate gene names: 18977046

Gene position: 684200-685402 (Clockwise)

Preceding gene: 18977045

Following gene: 18977047

Centisome position: 35.85

GC content: 47.05

Gene sequence:

>1203_bases
ATGGGACTTGAACAGGCAGTAGTTGACTTCTTCAACCACATGGGACTTCTTAATTTAACAGTGGGAAATGTAGTGATGAT
CATAGTTGGATTAACTCTAGTGTACCTGGCAATAAGGTACGAGATGGAACCTCTGCTCTTGCTCCCCATCGGCATCAGTG
CAGTTTTAGTTAATCTCCCTCTCTCCCACATGGCTAACTGGCCTCTAGCTCCCCAGCTCCCCCCTGAGATTCAGGAAAAC
ATATTCGCAACAATAAGCTACTTAAGTCAACAATATGGGCCCCCTGGTCTATTTGACCTCATCTACTACCTCCTCATAAA
GACTGAAGTAGTACCTCTCTTAATATTCTTCGGCCTTGGGGCCATGACTGACTTTGGTCCAATGATAGCAGATCCAAAGA
CAGCACTGCTTGGTGCTGCAGCCCAAATAGGGGTATTCGTCGCAATGCTGGTTGCCCTGGCCCTAGGATTTAACCTAAAG
GAAGCTGCGAGCATTGGGATCATTGGTGGTGCAGACGGACCTACAACCATTTATCTAACGACAAAATTGGCACCTCACAT
TCTCTCAGCAACTGCTGTAGCGGCTTACAGTTACATGAGCCTAGTTCCGCTAATCCAGCCACCAGTTATCAAGGCTCTAA
CAACACCAGAGGAGAGGAGAATTAGAATGGAGCAACTAAGGCCAGTATCTAAGAGGGAGAAGATACTCTTCCCAATTGCA
AGCATGATAGTTATCGGACTCCTCGTCCCCTCAGCTGCACCACTCATTGGAATGCTTATGATTGGCAATCTCTTTAGGGA
AAGTGGGGTTGTACAAAGGCTTAGCAAAGCTGCCCAGGAAGAATTAATGAACATCGTAACCATATTCCTTGGCCTGGGAA
TTGGATCAACAATGAGGGCCGAGAGCTTCTTAACTCCCAAGACGCTGATGATACTTGCCTTGGGTGTGGTTGCCTTTGCT
TCCGCAACGGCAGGTGGAGTATTGTTTGGCAAGATAATGATGAAGATCTCTGGAGGAAAGATTAACCCAATGATTGGAGC
TGCAGGAGTTTCAGCAGTTCCAATGAGTGCCAGAGTAGTTCAAAGGCTTGCAAGTGAAGAAGATCCAGGAAACTTCATAC
TCATGCACGCTATGGGACCCAATGTTGCGGGTGTCATAGGAACGGCCGTAGTCGCTGGAGTATTCTTATCAGCACTTGGC
TAA

Upstream 100 bases:

>100_bases
AATTCCATCGCCTAAGGATGGCGTTGTGAAGAAGATTTACGTCAAAGAAGGAGACACAGTTGATACTGGACAGCCATTAA
TTGAGTTAGGGTGAGGGAGA

Downstream 100 bases:

>100_bases
TCCCTATCATAAATTTTTTATTTATCTTTTTTGTTAGTAACTTTTTGGGATGAGATATGGACTTTGCCCTATTCATGGAG
AAGTACGGATATAAGATATT

Product: ion gradient-generating decarboxylase subunit beta

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MGLEQAVVDFFNHMGLLNLTVGNVVMIIVGLTLVYLAIRYEMEPLLLLPIGISAVLVNLPLSHMANWPLAPQLPPEIQEN
IFATISYLSQQYGPPGLFDLIYYLLIKTEVVPLLIFFGLGAMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLK
EAASIGIIGGADGPTTIYLTTKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERRIRMEQLRPVSKREKILFPIA
SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLTPKTLMILALGVVAFA
SATAGGVLFGKIMMKISGGKINPMIGAAGVSAVPMSARVVQRLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG

Sequences:

>Translated_400_residues
MGLEQAVVDFFNHMGLLNLTVGNVVMIIVGLTLVYLAIRYEMEPLLLLPIGISAVLVNLPLSHMANWPLAPQLPPEIQEN
IFATISYLSQQYGPPGLFDLIYYLLIKTEVVPLLIFFGLGAMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLK
EAASIGIIGGADGPTTIYLTTKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERRIRMEQLRPVSKREKILFPIA
SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLTPKTLMILALGVVAFA
SATAGGVLFGKIMMKISGGKINPMIGAAGVSAVPMSARVVQRLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG
>Mature_399_residues
GLEQAVVDFFNHMGLLNLTVGNVVMIIVGLTLVYLAIRYEMEPLLLLPIGISAVLVNLPLSHMANWPLAPQLPPEIQENI
FATISYLSQQYGPPGLFDLIYYLLIKTEVVPLLIFFGLGAMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKE
AASIGIIGGADGPTTIYLTTKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERRIRMEQLRPVSKREKILFPIAS
MIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLTPKTLMILALGVVAFAS
ATAGGVLFGKIMMKISGGKINPMIGAAGVSAVPMSARVVQRLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 42263; Mature: 42131

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLEQAVVDFFNHMGLLNLTVGNVVMIIVGLTLVYLAIRYEMEPLLLLPIGISAVLVNLP
CCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCC
LSHMANWPLAPQLPPEIQENIFATISYLSQQYGPPGLFDLIYYLLIKTEVVPLLIFFGLG
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLT
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEECCCCCEEEEEE
TKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERRIRMEQLRPVSKREKILFPIA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ESFLTPKTLMILALGVVAFASATAGGVLFGKIMMKISGGKINPMIGAAGVSAVPMSARVV
HHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
QRLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG
HHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GLEQAVVDFFNHMGLLNLTVGNVVMIIVGLTLVYLAIRYEMEPLLLLPIGISAVLVNLP
CHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCC
LSHMANWPLAPQLPPEIQENIFATISYLSQQYGPPGLFDLIYYLLIKTEVVPLLIFFGLG
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLT
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEECCCCCEEEEEE
TKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERRIRMEQLRPVSKREKILFPIA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ESFLTPKTLMILALGVVAFASATAGGVLFGKIMMKISGGKINPMIGAAGVSAVPMSARVV
HHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
QRLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG
HHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]