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The map label for this gene is ygcB [C]

Identifier: 18977012

GI number: 18977012

Start: 653114

End: 655090

Strand: Reverse

Name: ygcB [C]

Synonym: PF0640

Alternate gene names: 18977012

Gene position: 655090-653114 (Counterclockwise)

Preceding gene: 18977013

Following gene: 18977011

Centisome position: 34.33

GC content: 40.36

Gene sequence:

>1977_bases
ATGGATACCGAAAAACTCTTCAGAGAGCTGACCGGATTTGAACCATATGATTACCAACTTCGTGCATGGGAAAAAATCAG
AGAGATTATGAATAACGGTGGAAAAGTCATTATTGAAGTGCCTACGGCCGGAGGAAAGACTGAAACTGCTGTGATGCCAT
TCTTCGCTGGAATCTACAACAATAATTGGCCTGTTGCTAGATTGGTTTATGTCTTGCCAACTAGGTCACTTGTAGAAAAA
CAAGCAGAAAGACTAAGAAACTTGGTTTACAAACTTTTACAGTTAAAAGGAAAATCAAAAGAAGAGGCAGAAAAGCTAGC
TAGAGAACTCGTGGTTGTTGAATACGGGCTTGAGAAGACTCATGCATTTCTTGGTTGGGTTGTAGTGACGACGTGGGATG
CTTTCCTCTATGGTCTTGCAGCTCATAGAACGGTAGGGAATAGATTCACTTTTCCAGCGGGTGCAATAGCTCAATCCCTT
GTTATATTTGACGAAGTCCAGATGTATCAGGATGAGTCAATGTACATGCCGCGCCTTCTCTCACTAGTCGTTGGAATTCT
TGAAGAGGCCAATGTTCCTCTCGTTATAATGAGTGCCACAATTCCCTCAAAGCTTAGGGAAATGATAGCAGGGGATACGG
AAGTTATAACTGTGGATAAGAATGACAAGAATAAACCTTCAAGGGGAAATGTAAAAGTCAGATTAGTTGAGGGGGATATT
ACAGATGTTCTTAATGACATTAAGAAGATTCTAAAGAATGGGAAGAAAGTTCTTGTTGTGCGTAATACCGTTAGAAAAGC
TGTTGAAACCTATCAGGTTTTAAAGAAAAAGCTAAACGATACCCTAGCTAATCCCTCAGACGCCCTACTCATACACAGTA
GGTTCACAATTGGCGATAGGAGGGAGAAGGAGAGAGCTCTTGACTCAGCAAGATTGATCGTTGCTACCCAGGTAGTGGAG
GCTGGACTTGACTTGCCAAACGTGGGACTAGTTGTGACTGATATAGCACCCCTTGATGCCCTTATCCAGCGTATTGGGAG
GTGTGCAAGAAGACCGGGAGAAGAAGGAGAAGGAATAATACTCATCCCAGTAGAAAACTGCATTGAACATGAAAAGATCG
TGAGGGGACTTTCAGAACTTATGGAAAAAATAGGTGAGGATACAGTTGTTTTTGCAACTGTTACAAGCACAAATGAATAC
GATAGAGTCGTGGAGATCCACTATGGAGAAGGAAAGAAAAATTTTGTGTACGTTGGTGACATTGACACTGCAAGAAGAGT
CTTAGAAAAGAAAAGAAGTAAAAAACTACCCAAAGATCTCTACATAATTCCATACTCGGTTTCACCATATGATCCATTGG
TGCTCCTCACTACTTATGATGAATTATCAAAGATTGGAGAATACCTAGCAGATACAACAAAAGCTAGAAAAGCCCTTGAT
AGGGTATACAAGTTCCATTATGAGAACAACATCGTGCCGAAAGAGTTTGCTTCAGCATACATCTACTTCAAGGAGCTAAA
ACTGTTTTCAGCTCCTCCAGAATATGAACTTCGCTCCAGACCAGAGCTATATGTATTATTGTATCCAATGAACATTGAGA
AAAATGAGAGAGTAGAAGATAAGGTAATAGACAACCTCGAGACAGCTAGGATAATTCGAATCAGCTATAGTGTAAAAGAA
TGGAAAAAATCAGATGTCGTGATTGGTAGATTAATGAAAGAGTGGGACAAGAATGCTGAAAAGTGGGTATGGAAAGTTCG
GAAATCATTCAAGATAGATCCATATGAGATATATGTAATTGATGCCAAGTACTATAACTCGGAATTGGGATTTATTACAA
ATCTTAGCGACACGAATTCTCACACAGATTCTGACTCAAAAGTTCGGACAAGAAATTCTGAGCATTCGTCAAAGAAAAAC
CGCTCTAAAGGAAAGAAAGGGCAGACAAGTCTCGAAAACTGGGGGGTGAGAGTATGA

Upstream 100 bases:

>100_bases
TTGAAGAGCGCCGTTATAAAAGAATAGTATACTACGCAAGGACAATTTATCCTCCTGAAGTTGAGAAGGCTTTAACTGTT
GATGGGGAGGTGCTTGGAAT

Downstream 100 bases:

>100_bases
GTTGTAAGGCATTCCAAGGACAAACATTAAGAGAGCACATTGAGGCGATGCTCGCTGCGTGGGAGATTGTCAAAAACAAA
TACATACCCTCAATTATCAG

Product: ATP-dependent RNA helicase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 658; Mature: 658

Protein sequence:

>658_residues
MDTEKLFRELTGFEPYDYQLRAWEKIREIMNNGGKVIIEVPTAGGKTETAVMPFFAGIYNNNWPVARLVYVLPTRSLVEK
QAERLRNLVYKLLQLKGKSKEEAEKLARELVVVEYGLEKTHAFLGWVVVTTWDAFLYGLAAHRTVGNRFTFPAGAIAQSL
VIFDEVQMYQDESMYMPRLLSLVVGILEEANVPLVIMSATIPSKLREMIAGDTEVITVDKNDKNKPSRGNVKVRLVEGDI
TDVLNDIKKILKNGKKVLVVRNTVRKAVETYQVLKKKLNDTLANPSDALLIHSRFTIGDRREKERALDSARLIVATQVVE
AGLDLPNVGLVVTDIAPLDALIQRIGRCARRPGEEGEGIILIPVENCIEHEKIVRGLSELMEKIGEDTVVFATVTSTNEY
DRVVEIHYGEGKKNFVYVGDIDTARRVLEKKRSKKLPKDLYIIPYSVSPYDPLVLLTTYDELSKIGEYLADTTKARKALD
RVYKFHYENNIVPKEFASAYIYFKELKLFSAPPEYELRSRPELYVLLYPMNIEKNERVEDKVIDNLETARIIRISYSVKE
WKKSDVVIGRLMKEWDKNAEKWVWKVRKSFKIDPYEIYVIDAKYYNSELGFITNLSDTNSHTDSDSKVRTRNSEHSSKKN
RSKGKKGQTSLENWGVRV

Sequences:

>Translated_658_residues
MDTEKLFRELTGFEPYDYQLRAWEKIREIMNNGGKVIIEVPTAGGKTETAVMPFFAGIYNNNWPVARLVYVLPTRSLVEK
QAERLRNLVYKLLQLKGKSKEEAEKLARELVVVEYGLEKTHAFLGWVVVTTWDAFLYGLAAHRTVGNRFTFPAGAIAQSL
VIFDEVQMYQDESMYMPRLLSLVVGILEEANVPLVIMSATIPSKLREMIAGDTEVITVDKNDKNKPSRGNVKVRLVEGDI
TDVLNDIKKILKNGKKVLVVRNTVRKAVETYQVLKKKLNDTLANPSDALLIHSRFTIGDRREKERALDSARLIVATQVVE
AGLDLPNVGLVVTDIAPLDALIQRIGRCARRPGEEGEGIILIPVENCIEHEKIVRGLSELMEKIGEDTVVFATVTSTNEY
DRVVEIHYGEGKKNFVYVGDIDTARRVLEKKRSKKLPKDLYIIPYSVSPYDPLVLLTTYDELSKIGEYLADTTKARKALD
RVYKFHYENNIVPKEFASAYIYFKELKLFSAPPEYELRSRPELYVLLYPMNIEKNERVEDKVIDNLETARIIRISYSVKE
WKKSDVVIGRLMKEWDKNAEKWVWKVRKSFKIDPYEIYVIDAKYYNSELGFITNLSDTNSHTDSDSKVRTRNSEHSSKKN
RSKGKKGQTSLENWGVRV
>Mature_658_residues
MDTEKLFRELTGFEPYDYQLRAWEKIREIMNNGGKVIIEVPTAGGKTETAVMPFFAGIYNNNWPVARLVYVLPTRSLVEK
QAERLRNLVYKLLQLKGKSKEEAEKLARELVVVEYGLEKTHAFLGWVVVTTWDAFLYGLAAHRTVGNRFTFPAGAIAQSL
VIFDEVQMYQDESMYMPRLLSLVVGILEEANVPLVIMSATIPSKLREMIAGDTEVITVDKNDKNKPSRGNVKVRLVEGDI
TDVLNDIKKILKNGKKVLVVRNTVRKAVETYQVLKKKLNDTLANPSDALLIHSRFTIGDRREKERALDSARLIVATQVVE
AGLDLPNVGLVVTDIAPLDALIQRIGRCARRPGEEGEGIILIPVENCIEHEKIVRGLSELMEKIGEDTVVFATVTSTNEY
DRVVEIHYGEGKKNFVYVGDIDTARRVLEKKRSKKLPKDLYIIPYSVSPYDPLVLLTTYDELSKIGEYLADTTKARKALD
RVYKFHYENNIVPKEFASAYIYFKELKLFSAPPEYELRSRPELYVLLYPMNIEKNERVEDKVIDNLETARIIRISYSVKE
WKKSDVVIGRLMKEWDKNAEKWVWKVRKSFKIDPYEIYVIDAKYYNSELGFITNLSDTNSHTDSDSKVRTRNSEHSSKKN
RSKGKKGQTSLENWGVRV

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 75306; Mature: 75306

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTEKLFRELTGFEPYDYQLRAWEKIREIMNNGGKVIIEVPTAGGKTETAVMPFFAGIYN
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCC
NNWPVARLVYVLPTRSLVEKQAERLRNLVYKLLQLKGKSKEEAEKLARELVVVEYGLEKT
CCCCHHHHEEHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
HAFLGWVVVTTWDAFLYGLAAHRTVGNRFTFPAGAIAQSLVIFDEVQMYQDESMYMPRLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
SLVVGILEEANVPLVIMSATIPSKLREMIAGDTEVITVDKNDKNKPSRGNVKVRLVEGDI
HHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEECCCH
TDVLNDIKKILKNGKKVLVVRNTVRKAVETYQVLKKKLNDTLANPSDALLIHSRFTIGDR
HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH
REKERALDSARLIVATQVVEAGLDLPNVGLVVTDIAPLDALIQRIGRCARRPGEEGEGII
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEE
LIPVENCIEHEKIVRGLSELMEKIGEDTVVFATVTSTNEYDRVVEIHYGEGKKNFVYVGD
EEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEC
IDTARRVLEKKRSKKLPKDLYIIPYSVSPYDPLVLLTTYDELSKIGEYLADTTKARKALD
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
RVYKFHYENNIVPKEFASAYIYFKELKLFSAPPEYELRSRPELYVLLYPMNIEKNERVED
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCHHH
KVIDNLETARIIRISYSVKEWKKSDVVIGRLMKEWDKNAEKWVWKVRKSFKIDPYEIYVI
HHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEE
DAKYYNSELGFITNLSDTNSHTDSDSKVRTRNSEHSSKKNRSKGKKGQTSLENWGVRV
EEHEECCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MDTEKLFRELTGFEPYDYQLRAWEKIREIMNNGGKVIIEVPTAGGKTETAVMPFFAGIYN
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCC
NNWPVARLVYVLPTRSLVEKQAERLRNLVYKLLQLKGKSKEEAEKLARELVVVEYGLEKT
CCCCHHHHEEHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHH
HAFLGWVVVTTWDAFLYGLAAHRTVGNRFTFPAGAIAQSLVIFDEVQMYQDESMYMPRLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
SLVVGILEEANVPLVIMSATIPSKLREMIAGDTEVITVDKNDKNKPSRGNVKVRLVEGDI
HHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEECCCH
TDVLNDIKKILKNGKKVLVVRNTVRKAVETYQVLKKKLNDTLANPSDALLIHSRFTIGDR
HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH
REKERALDSARLIVATQVVEAGLDLPNVGLVVTDIAPLDALIQRIGRCARRPGEEGEGII
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEE
LIPVENCIEHEKIVRGLSELMEKIGEDTVVFATVTSTNEYDRVVEIHYGEGKKNFVYVGD
EEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEC
IDTARRVLEKKRSKKLPKDLYIIPYSVSPYDPLVLLTTYDELSKIGEYLADTTKARKALD
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
RVYKFHYENNIVPKEFASAYIYFKELKLFSAPPEYELRSRPELYVLLYPMNIEKNERVED
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCHHH
KVIDNLETARIIRISYSVKEWKKSDVVIGRLMKEWDKNAEKWVWKVRKSFKIDPYEIYVI
HHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEE
DAKYYNSELGFITNLSDTNSHTDSDSKVRTRNSEHSSKKNRSKGKKGQTSLENWGVRV
EEHEECCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]