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The map label for this gene is 18977013

Identifier: 18977013

GI number: 18977013

Start: 655060

End: 655851

Strand: Reverse

Name: 18977013

Synonym: PF0641

Alternate gene names: NA

Gene position: 655851-655060 (Counterclockwise)

Preceding gene: 33359495

Following gene: 18977012

Centisome position: 34.37

GC content: 41.41

Gene sequence:

>792_bases
ATGGACATCCTTCTCGTTTGCCTTCGCTTTCCATTTTTCTCAGTAGCTAAGCGTTCTTATCAAGTGAGGACATCTTTCCT
ACTTCCTCCACCATCGGCTCTAAAAGGAGCACTAGCAAAAGGGCTTATTCTCCTGAAACCTGAGAAGTATGCCAGTAGTT
CATTAGATGAAGCCGCTCTCAAAGCCATAAAGGAAATCGAGAGCAAGCTAGTTGACATTAAAGCTGTGAGTGTTGCCCCT
CTAAGTCCCCTCATTAGGAATGCTTTCCTACTCAAACGATTGAGAAATTTAGAATCCGGTTCCAATGCCGAAAAGAGCGA
TGCTATGCGACGAGAATACACCTTCACGCGAGAATTGCTTGTTGCCTATATTTTCAAGAATTTAACTCAAGAGGAGAAAA
ACCTCTACCTAAAAGCAGCAATGCTCATTGATGTCATTGGGGACACAGAAAGTTTAGCTACTCCAGTTTGGGCTTCTTTT
GTAAAGCCTGAAGATAAAAAAGCACCTCTCGCATTCTCAGCGCCTTATACTGAAATATACTCTTTGCTGTCTTCGAAGAT
TCAAGCAAAGGGCAAGATAAGGATGTATATAGAAAAAATGAGAGTATCACCAGAATACTCAAAAACTAAAGGGCCACAGG
AGGAGATCTTTTATTTACCAATTGAAGAGCGCCGTTATAAAAGAATAGTATACTACGCAAGGACAATTTATCCTCCTGAA
GTTGAGAAGGCTTTAACTGTTGATGGGGAGGTGCTTGGAATATGGATACCGAAAAACTCTTCAGAGAGCTGA

Upstream 100 bases:

>100_bases
ATACAACGTTGACTTGGGAGAGGATATCGAAGCTACTAAAGTTTCCTCCGTAGAAGAGCTTGTTGCTAATCTAGTCAAAA
TGGTGGGAGGTAAGGAGTGA

Downstream 100 bases:

>100_bases
CCGGATTTGAACCATATGATTACCAACTTCGTGCATGGGAAAAAATCAGAGAGATTATGAATAACGGTGGAAAAGTCATT
ATTGAAGTGCCTACGGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MDILLVCLRFPFFSVAKRSYQVRTSFLLPPPSALKGALAKGLILLKPEKYASSSLDEAALKAIKEIESKLVDIKAVSVAP
LSPLIRNAFLLKRLRNLESGSNAEKSDAMRREYTFTRELLVAYIFKNLTQEEKNLYLKAAMLIDVIGDTESLATPVWASF
VKPEDKKAPLAFSAPYTEIYSLLSSKIQAKGKIRMYIEKMRVSPEYSKTKGPQEEIFYLPIEERRYKRIVYYARTIYPPE
VEKALTVDGEVLGIWIPKNSSES

Sequences:

>Translated_263_residues
MDILLVCLRFPFFSVAKRSYQVRTSFLLPPPSALKGALAKGLILLKPEKYASSSLDEAALKAIKEIESKLVDIKAVSVAP
LSPLIRNAFLLKRLRNLESGSNAEKSDAMRREYTFTRELLVAYIFKNLTQEEKNLYLKAAMLIDVIGDTESLATPVWASF
VKPEDKKAPLAFSAPYTEIYSLLSSKIQAKGKIRMYIEKMRVSPEYSKTKGPQEEIFYLPIEERRYKRIVYYARTIYPPE
VEKALTVDGEVLGIWIPKNSSES
>Mature_263_residues
MDILLVCLRFPFFSVAKRSYQVRTSFLLPPPSALKGALAKGLILLKPEKYASSSLDEAALKAIKEIESKLVDIKAVSVAP
LSPLIRNAFLLKRLRNLESGSNAEKSDAMRREYTFTRELLVAYIFKNLTQEEKNLYLKAAMLIDVIGDTESLATPVWASF
VKPEDKKAPLAFSAPYTEIYSLLSSKIQAKGKIRMYIEKMRVSPEYSKTKGPQEEIFYLPIEERRYKRIVYYARTIYPPE
VEKALTVDGEVLGIWIPKNSSES

Specific function: Unknown

COG id: COG1688

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010153 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 29841; Mature: 29841

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDILLVCLRFPFFSVAKRSYQVRTSFLLPPPSALKGALAKGLILLKPEKYASSSLDEAAL
CHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCEEEECCCHHHCCCHHHHHH
KAIKEIESKLVDIKAVSVAPLSPLIRNAFLLKRLRNLESGSNAEKSDAMRREYTFTRELL
HHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
VAYIFKNLTQEEKNLYLKAAMLIDVIGDTESLATPVWASFVKPEDKKAPLAFSAPYTEIY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCHHHHH
SLLSSKIQAKGKIRMYIEKMRVSPEYSKTKGPQEEIFYLPIEERRYKRIVYYARTIYPPE
HHHHHHHHCCCHHHHHHHHHHCCCCHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCC
VEKALTVDGEVLGIWIPKNSSES
HHHHEEECCEEEEEEECCCCCCC
>Mature Secondary Structure
MDILLVCLRFPFFSVAKRSYQVRTSFLLPPPSALKGALAKGLILLKPEKYASSSLDEAAL
CHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCEEEECCCHHHCCCHHHHHH
KAIKEIESKLVDIKAVSVAPLSPLIRNAFLLKRLRNLESGSNAEKSDAMRREYTFTRELL
HHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
VAYIFKNLTQEEKNLYLKAAMLIDVIGDTESLATPVWASFVKPEDKKAPLAFSAPYTEIY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCHHHHH
SLLSSKIQAKGKIRMYIEKMRVSPEYSKTKGPQEEIFYLPIEERRYKRIVYYARTIYPPE
HHHHHHHHCCCHHHHHHHHHHCCCCHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCC
VEKALTVDGEVLGIWIPKNSSES
HHHHEEECCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]