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The map label for this gene is tfx

Identifier: 18976907

GI number: 18976907

Start: 551853

End: 552281

Strand: Reverse

Name: tfx

Synonym: PF0535

Alternate gene names: NA

Gene position: 552281-551853 (Counterclockwise)

Preceding gene: 18976908

Following gene: 18976903

Centisome position: 28.94

GC content: 36.13

Gene sequence:

>429_bases
ATGAAGACTTTTCTCACCGAGCAACAGATAAAGGTGCTAATGTTGAGAGCTAAAGGATATAAGCAGAGTGAAATTGCAAA
AATTCTTGGAACAAGCAGGGCAAACGTTAGCATTTTAGAAAAGAGAGCTATGGAAAAAATTGAGAAAGCTCGAAATACAT
TACTGCTCTGGGAGCAGATAAACTCAAAGGTGATAGTGGAAATTAAAGCTGGAGAAGATATATTTAGTATACCCGAAAAG
TTCTTCAAAAAGGCAGACAAAGTAGGAGTAAAGGTTCCTTACAGTACAGCTGAAATCATAACGTTTTTAGTTGAACATGC
GCCAGTTGAAGATAGGCTTGCTAAGAGGGATTTTGTGCTATTTCTAGATTCAAAGAATAAGTTAAGAATTGGTGATTGCC
TAGTCATAGAAGAGATTAAAGAGGATTAA

Upstream 100 bases:

>100_bases
GGCGATGACGAAGGGTGACGTCCCTGAGTGGTGATGAAGCCCGCGATAGCTGAGCAATTCTTTTAACTATTGTTTTTGAT
TTAAATGTGGGTGCTTAACA

Downstream 100 bases:

>100_bases
ACTATTAGTAAAATCTCTACTTCTAAATTTTATGAATCCCTGATCAGCGTCTATTGTGACGATTAAGGACAGTCAAATAC
CCAAGGAAAGTTAAAGAGCA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKTFLTEQQIKVLMLRAKGYKQSEIAKILGTSRANVSILEKRAMEKIEKARNTLLLWEQINSKVIVEIKAGEDIFSIPEK
FFKKADKVGVKVPYSTAEIITFLVEHAPVEDRLAKRDFVLFLDSKNKLRIGDCLVIEEIKED

Sequences:

>Translated_142_residues
MKTFLTEQQIKVLMLRAKGYKQSEIAKILGTSRANVSILEKRAMEKIEKARNTLLLWEQINSKVIVEIKAGEDIFSIPEK
FFKKADKVGVKVPYSTAEIITFLVEHAPVEDRLAKRDFVLFLDSKNKLRIGDCLVIEEIKED
>Mature_142_residues
MKTFLTEQQIKVLMLRAKGYKQSEIAKILGTSRANVSILEKRAMEKIEKARNTLLLWEQINSKVIVEIKAGEDIFSIPEK
FFKKADKVGVKVPYSTAEIITFLVEHAPVEDRLAKRDFVLFLDSKNKLRIGDCLVIEEIKED

Specific function: Putative transcriptional regulator

COG id: COG1356

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tfx family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y535_PYRFU (Q8U3D3)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_578264.1
- ProteinModelPortal:   Q8U3D3
- SMR:   Q8U3D3
- EnsemblBacteria:   EBPYRT00000004135
- GeneID:   1468376
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF0535
- NMPDR:   fig|186497.1.peg.547
- GeneTree:   EBGT00050000022819
- HOGENOM:   HBG554975
- OMA:   WEQINSK
- ProtClustDB:   PRK03975
- HAMAP:   MF_00620
- InterPro:   IPR007630
- InterPro:   IPR004645
- InterPro:   IPR018384
- Gene3D:   G3DSA:3.30.1190.10
- PIRSF:   PIRSF004932
- TIGRFAMs:   TIGR00721

Pfam domain/function: PF04545 Sigma70_r4; SSF89915 Tfx_DNA-bd

EC number: NA

Molecular weight: Translated: 16310; Mature: 16310

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFLTEQQIKVLMLRAKGYKQSEIAKILGTSRANVSILEKRAMEKIEKARNTLLLWEQI
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEC
NSKVIVEIKAGEDIFSIPEKFFKKADKVGVKVPYSTAEIITFLVEHAPVEDRLAKRDFVL
CCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEEE
FLDSKNKLRIGDCLVIEEIKED
EECCCCCEEECCEEEEEECCCC
>Mature Secondary Structure
MKTFLTEQQIKVLMLRAKGYKQSEIAKILGTSRANVSILEKRAMEKIEKARNTLLLWEQI
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEC
NSKVIVEIKAGEDIFSIPEKFFKKADKVGVKVPYSTAEIITFLVEHAPVEDRLAKRDFVL
CCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEEE
FLDSKNKLRIGDCLVIEEIKED
EECCCCCEEECCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA