Click here to switch to the map view.

The map label for this gene is rps27e

Identifier: 18976590

GI number: 18976590

Start: 234934

End: 235125

Strand: Direct

Name: rps27e

Synonym: PF0218

Alternate gene names: 18976590

Gene position: 234934-235125 (Clockwise)

Preceding gene: 161484704

Following gene: 18976592

Centisome position: 12.31

GC content: 40.1

Gene sequence:

>192_bases
ATGGCTAAGCCAATAATTCCAATGCCAAGATCAAGATTTCTAAGAGTGAAGTGCATTGACTGTGGAAATGAGCAGATAGT
ATTTAGCCATCCAGCAACTAAAGTAAGATGCCTAATTTGCGGAGCAACTCTTGTTGAGCCAACAGGTGGAAAGGGAATTG
TAAAAGCTAAGATCCTTGAAGTTCTAGAGTGA

Upstream 100 bases:

>100_bases
AAGCTAGACTTGAGATTCAGATGCACTGAGTGTGGAAAAGCTCACACTAGAGGAAGAGGATTTAGAGTAAAGAAGTTTGA
GCTAGTGGAGGGATGAGCGA

Downstream 100 bases:

>100_bases
CCTCCGCATAACTTCTCGGGTCTTCCCAAACCCTAACCTTTATTTCATAAATGTTTTTGTCTGCTTTCTCTAATATTTTC
TCTACAAACCATTCTGCTAG

Product: 30S ribosomal protein S27e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 63; Mature: 62

Protein sequence:

>63_residues
MAKPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIVKAKILEVLE

Sequences:

>Translated_63_residues
MAKPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIVKAKILEVLE
>Mature_62_residues
AKPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIVKAKILEVLE

Specific function: Unknown

COG id: COG2051

COG function: function code J; Ribosomal protein S27E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S27e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS27_PYRFU (Q8U474)

Other databases:

- EMBL:   AE009950
- RefSeq:   NP_577947.1
- ProteinModelPortal:   Q8U474
- SMR:   Q8U474
- EnsemblBacteria:   EBPYRT00000005084
- GeneID:   1468050
- GenomeReviews:   AE009950_GR
- KEGG:   pfu:PF0218
- NMPDR:   fig|186497.1.peg.221
- GeneTree:   EBGT00050000023353
- HOGENOM:   HBG392194
- OMA:   CIDCGNE
- ProtClustDB:   PRK00415
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00371
- InterPro:   IPR000592
- InterPro:   IPR022959
- InterPro:   IPR011332
- PANTHER:   PTHR11594

Pfam domain/function: PF01667 Ribosomal_S27e; SSF57829 Ribosomal_zn-bd

EC number: NA

Molecular weight: Translated: 6877; Mature: 6746

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS01168 RIBOSOMAL_S27E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
9.5 %Cys+Met (Translated Protein)
6.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIVKAKILE
CCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEEEEECCEEECCCCCCCCHHHHHHH
VLE
HCC
>Mature Secondary Structure 
AKPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIVKAKILE
CCCCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEEEEECCEEECCCCCCCCHHHHHHH
VLE
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA