| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is aprX [H]
Identifier: 18311592
GI number: 18311592
Start: 2985695
End: 2986891
Strand: Direct
Name: aprX [H]
Synonym: CPE2610
Alternate gene names: 18311592
Gene position: 2985695-2986891 (Clockwise)
Preceding gene: 18311591
Following gene: 18311594
Centisome position: 98.49
GC content: 29.41
Gene sequence:
>1197_bases ATGTTTTCAATAAAACAAAAATTGGATAGCAATCTAAAAATTTATATAAATCGCTCTTATTATACAAATTATAGAGTTCT TATAAAATGCAAAAAATTTATGGAAGATATAACAAAGAAAATACCCAAGCTTAGAGGTATTGTTATAAGAGAAATTAAGT CATTAAATTTGATTTGCGCTATTCTTACACCAAAAGCTATTAATAGATTAATTGAATATCCTGAGGTAGAATTTATTTCT TTTGATGATCATGCTATACTTTGTGGGCTTAGTATAGGTACTGCTAATAGAATTGCCACCAATAAATCCTTTAATTTTAC TGGCAAGAATATATCTATTGGTTTAATTGATAGTGGAGTCTATCCTCATCAAGATCTAACAAATCCTACAAACAAAATAG ATATGTTTTTGGATTTATTAAATAACTACTCTTATCCTTATGATGATAATGGACATGGAACTGCCTTAAGTGGGATTATA TGTGGAAGTGGATATTCATCAAAGCTTGTTTTTAGAGGTATTGCAGAAAACACCAAAATATCTTGTGTAAAGGCCTTTGA TGCTAATGGAAAGGGCTATGTTTCAGATATACTTTTCGCCATTGAAACTCTTATAAATCAAGAGAATAATCCTATAAGAG TTTTATGTTTACCTTTTGAACTTACTAGCCATAATATTAAAATATCAGATTACTTTAACGAACTTTTTAAGTTAGCAGTT AGTAAAAATATAATTCCTGTTGTCCCTTCTGGAAGCATAGAAGGAGATAACACTATTCAGGGTTTAGCATTATCTCCTTG GTGTATAACAGTTGGTGGTATAGATTCTACAAAGACACCAACAACAACTTTTAAATTTTCTTCATCTGGAAATTCTAATG TGAAAAAACCAGATTTTTGTGCAGCCTGTGCTAATATAATGTGCTTAAACTCAGATAAAAAATATATTTCTGAAAGAAAT GGAATAAAACTATATCCTCATAAATTAGATAGTAGTTACACAGTCTTTCAAGGAACATCCCTAGCCTGTGCCTACATATC TGGAGTATGTGCACTACTTTTAGAGGCCAAGCCAGAACTAAATTACAAAGATTTATGTTCTTTATTAAAAATAGCTTCTA ATAATAAATATGAACTACCTTCTGATTCTGTTGGAGAAGGAGTCATAGATTTATCTTTTTTACTTGAAAATATTTAA
Upstream 100 bases:
>100_bases AGTTGGAATTATCATTTTTAAATGGAAAAGTTAATACATTGTCAAAATCATACTCCCATTCATATATTATAAAATAATAA ATAATATGGGAGTATTTATT
Downstream 100 bases:
>100_bases AACTAACTAATATAATCTACAGGATTAATAGGATTACCCTTATATATAAGTTCTAAATGCAGGTGAGGCCCCGTACTTCT TCCAGTACTACCAACTTTGG
Product: subtilase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MFSIKQKLDSNLKIYINRSYYTNYRVLIKCKKFMEDITKKIPKLRGIVIREIKSLNLICAILTPKAINRLIEYPEVEFIS FDDHAILCGLSIGTANRIATNKSFNFTGKNISIGLIDSGVYPHQDLTNPTNKIDMFLDLLNNYSYPYDDNGHGTALSGII CGSGYSSKLVFRGIAENTKISCVKAFDANGKGYVSDILFAIETLINQENNPIRVLCLPFELTSHNIKISDYFNELFKLAV SKNIIPVVPSGSIEGDNTIQGLALSPWCITVGGIDSTKTPTTTFKFSSSGNSNVKKPDFCAACANIMCLNSDKKYISERN GIKLYPHKLDSSYTVFQGTSLACAYISGVCALLLEAKPELNYKDLCSLLKIASNNKYELPSDSVGEGVIDLSFLLENI
Sequences:
>Translated_398_residues MFSIKQKLDSNLKIYINRSYYTNYRVLIKCKKFMEDITKKIPKLRGIVIREIKSLNLICAILTPKAINRLIEYPEVEFIS FDDHAILCGLSIGTANRIATNKSFNFTGKNISIGLIDSGVYPHQDLTNPTNKIDMFLDLLNNYSYPYDDNGHGTALSGII CGSGYSSKLVFRGIAENTKISCVKAFDANGKGYVSDILFAIETLINQENNPIRVLCLPFELTSHNIKISDYFNELFKLAV SKNIIPVVPSGSIEGDNTIQGLALSPWCITVGGIDSTKTPTTTFKFSSSGNSNVKKPDFCAACANIMCLNSDKKYISERN GIKLYPHKLDSSYTVFQGTSLACAYISGVCALLLEAKPELNYKDLCSLLKIASNNKYELPSDSVGEGVIDLSFLLENI >Mature_398_residues MFSIKQKLDSNLKIYINRSYYTNYRVLIKCKKFMEDITKKIPKLRGIVIREIKSLNLICAILTPKAINRLIEYPEVEFIS FDDHAILCGLSIGTANRIATNKSFNFTGKNISIGLIDSGVYPHQDLTNPTNKIDMFLDLLNNYSYPYDDNGHGTALSGII CGSGYSSKLVFRGIAENTKISCVKAFDANGKGYVSDILFAIETLINQENNPIRVLCLPFELTSHNIKISDYFNELFKLAV SKNIIPVVPSGSIEGDNTIQGLALSPWCITVGGIDSTKTPTTTFKFSSSGNSNVKKPDFCAACANIMCLNSDKKYISERN GIKLYPHKLDSSYTVFQGTSLACAYISGVCALLLEAKPELNYKDLCSLLKIASNNKYELPSDSVGEGVIDLSFLLENI
Specific function: Displays serine protease activity. Seems to have a broad substrate specificity [H]
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Cytoplasm (Probable). Note=Is leaked to the culture medium during the late stationary phase owing to cell lysis [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: NA
Molecular weight: Translated: 44019; Mature: 44019
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: PS00136 SUBTILASE_ASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSIKQKLDSNLKIYINRSYYTNYRVLIKCKKFMEDITKKIPKLRGIVIREIKSLNLICA CCCCHHHCCCCEEEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE ILTPKAINRLIEYPEVEFISFDDHAILCGLSIGTANRIATNKSFNFTGKNISIGLIDSGV EECHHHHHHHHCCCCEEEEEECCCEEEEEEEECCCCCEECCCCCEECCCEEEEEEEECCC YPHQDLTNPTNKIDMFLDLLNNYSYPYDDNGHGTALSGIICGSGYSSKLVFRGIAENTKI CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCEE SCVKAFDANGKGYVSDILFAIETLINQENNPIRVLCLPFELTSHNIKISDYFNELFKLAV EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEHHHHHHHHHHHH SKNIIPVVPSGSIEGDNTIQGLALSPWCITVGGIDSTKTPTTTFKFSSSGNSNVKKPDFC CCCCEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHH AACANIMCLNSDKKYISERNGIKLYPHKLDSSYTVFQGTSLACAYISGVCALLLEAKPEL HHHHCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC NYKDLCSLLKIASNNKYELPSDSVGEGVIDLSFLLENI CHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHCC >Mature Secondary Structure MFSIKQKLDSNLKIYINRSYYTNYRVLIKCKKFMEDITKKIPKLRGIVIREIKSLNLICA CCCCHHHCCCCEEEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE ILTPKAINRLIEYPEVEFISFDDHAILCGLSIGTANRIATNKSFNFTGKNISIGLIDSGV EECHHHHHHHHCCCCEEEEEECCCEEEEEEEECCCCCEECCCCCEECCCEEEEEEEECCC YPHQDLTNPTNKIDMFLDLLNNYSYPYDDNGHGTALSGIICGSGYSSKLVFRGIAENTKI CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCEE SCVKAFDANGKGYVSDILFAIETLINQENNPIRVLCLPFELTSHNIKISDYFNELFKLAV EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEHHHHHHHHHHHH SKNIIPVVPSGSIEGDNTIQGLALSPWCITVGGIDSTKTPTTTFKFSSSGNSNVKKPDFC CCCCEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHH AACANIMCLNSDKKYISERNGIKLYPHKLDSSYTVFQGTSLACAYISGVCALLLEAKPEL HHHHCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC NYKDLCSLLKIASNNKYELPSDSVGEGVIDLSFLLENI CHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]