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The map label for this gene is ytqA [H]

Identifier: 18311539

GI number: 18311539

Start: 2927377

End: 2928312

Strand: Reverse

Name: ytqA [H]

Synonym: CPE2557

Alternate gene names: 18311539

Gene position: 2928312-2927377 (Counterclockwise)

Preceding gene: 18311540

Following gene: 18311538

Centisome position: 96.6

GC content: 31.94

Gene sequence:

>936_bases
ATGGAAAAAAGAAAAACATGGGGAGACAAGAGATATAATACTTTAAATAGATTCTTAAGAGAAAAGTTTGGAGAAAAAGT
ATTTAAAATAAGTTTAGATGGTGGTTTTACATGTCCTAATAGAGACGGTAAGGTTGCTAAGGGAGGATGTACTTTTTGTA
GTTCAAAGGGGTCAGGAGATTATGCTGGACAAAGAACTTTAAGTATTGGTACTCAGTTTGATAATGTTAAAGAGATGATG
AATAAGAAGTGGAAAGAGGGAAAATACATAGCATATTTTCAAGCTTACACTAATACATATGCTCCTGTTGAAGAACTAAG
AAGAAAATATGAGGAAGCAATTAATAAAGAAGGTGTGGTTGCCCTTGCTATAGGTACAAGACCAGATTGTATAAATGAAG
AAGTTTTAGATTTATTAGAGGAAATGAATAAAAAGGTATATACTTGGGTTGAGTTAGGACTTCAAACAATTCATGATGAT
ACTGCTAGAAGTTTTAATAGAGGATATGATTTAGAAGTATTTGATAAGGCTATGGAAGGATTAAAAAGCAGAGGAATAGA
TACTGTAGTTCACTGTATATTTGGACTTCCTGGAGAAAGTAAAGAGCAAATGTTAGAAACTGTTGATTATGTTTCTAGAT
GTGGAGCGCAAGGAATAAAATTACACTTACTTCATCTAATGGAAGGAACAAGAATGGTTAAGGACTATGAAGAAGGTAGA
TTAAAATTCTTAACTCAAGAGGAATATGTTGATTTAATTTGTACGGCCATAAGTAGAATACCTCAAAATATGGTTATACA
TAGACTAACAGGAGATGCCCCTAGACAACTTCTTATAGGACCTATGTGGAGTTTAAAAAAATGGGAAGTTTTAAATGCTA
TTGATAATGCTCTTGAAGATAATGATATTTATCAAGGAAAGAATTTTGAAGAATAA

Upstream 100 bases:

>100_bases
AACTATAGTATAATATAAAATAAGTTAATCATAACCCTTAAATTTATGATTAACTTTTTTATTTTAAAGAAATTTTGATT
TTAATGAAAAGGTGATATAA

Downstream 100 bases:

>100_bases
TTTTAAAAATAAGGTGGGGAATTTTTATGAAAATTGATGTTATAATTTCTGCAGATTATATAGATAGTGAATCACTTAAA
GGAAAGATAGCTGTGGTTAT

Product: radical SAM protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MEKRKTWGDKRYNTLNRFLREKFGEKVFKISLDGGFTCPNRDGKVAKGGCTFCSSKGSGDYAGQRTLSIGTQFDNVKEMM
NKKWKEGKYIAYFQAYTNTYAPVEELRRKYEEAINKEGVVALAIGTRPDCINEEVLDLLEEMNKKVYTWVELGLQTIHDD
TARSFNRGYDLEVFDKAMEGLKSRGIDTVVHCIFGLPGESKEQMLETVDYVSRCGAQGIKLHLLHLMEGTRMVKDYEEGR
LKFLTQEEYVDLICTAISRIPQNMVIHRLTGDAPRQLLIGPMWSLKKWEVLNAIDNALEDNDIYQGKNFEE

Sequences:

>Translated_311_residues
MEKRKTWGDKRYNTLNRFLREKFGEKVFKISLDGGFTCPNRDGKVAKGGCTFCSSKGSGDYAGQRTLSIGTQFDNVKEMM
NKKWKEGKYIAYFQAYTNTYAPVEELRRKYEEAINKEGVVALAIGTRPDCINEEVLDLLEEMNKKVYTWVELGLQTIHDD
TARSFNRGYDLEVFDKAMEGLKSRGIDTVVHCIFGLPGESKEQMLETVDYVSRCGAQGIKLHLLHLMEGTRMVKDYEEGR
LKFLTQEEYVDLICTAISRIPQNMVIHRLTGDAPRQLLIGPMWSLKKWEVLNAIDNALEDNDIYQGKNFEE
>Mature_311_residues
MEKRKTWGDKRYNTLNRFLREKFGEKVFKISLDGGFTCPNRDGKVAKGGCTFCSSKGSGDYAGQRTLSIGTQFDNVKEMM
NKKWKEGKYIAYFQAYTNTYAPVEELRRKYEEAINKEGVVALAIGTRPDCINEEVLDLLEEMNKKVYTWVELGLQTIHDD
TARSFNRGYDLEVFDKAMEGLKSRGIDTVVHCIFGLPGESKEQMLETVDYVSRCGAQGIKLHLLHLMEGTRMVKDYEEGR
LKFLTQEEYVDLICTAISRIPQNMVIHRLTGDAPRQLLIGPMWSLKKWEVLNAIDNALEDNDIYQGKNFEE

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=296, Percent_Identity=38.8513513513513, Blast_Score=239, Evalue=2e-64,
Organism=Caenorhabditis elegans, GI133955098, Length=188, Percent_Identity=29.2553191489362, Blast_Score=68, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6325171, Length=166, Percent_Identity=27.1084337349398, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 35693; Mature: 35693

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRKTWGDKRYNTLNRFLREKFGEKVFKISLDGGFTCPNRDGKVAKGGCTFCSSKGSGD
CCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEECCCCCEECCCCCCC
YAGQRTLSIGTQFDNVKEMMNKKWKEGKYIAYFQAYTNTYAPVEELRRKYEEAINKEGVV
CCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCHHHHHHHHHHHHCCCCEE
ALAIGTRPDCINEEVLDLLEEMNKKVYTWVELGLQTIHDDTARSFNRGYDLEVFDKAMEG
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LKSRGIDTVVHCIFGLPGESKEQMLETVDYVSRCGAQGIKLHLLHLMEGTRMVKDYEEGR
HHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
LKFLTQEEYVDLICTAISRIPQNMVIHRLTGDAPRQLLIGPMWSLKKWEVLNAIDNALED
EEEECHHHHHHHHHHHHHHCCHHHEEHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
NDIYQGKNFEE
CCCCCCCCCCC
>Mature Secondary Structure
MEKRKTWGDKRYNTLNRFLREKFGEKVFKISLDGGFTCPNRDGKVAKGGCTFCSSKGSGD
CCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEECCCCCEECCCCCCC
YAGQRTLSIGTQFDNVKEMMNKKWKEGKYIAYFQAYTNTYAPVEELRRKYEEAINKEGVV
CCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCHHHHHHHHHHHHCCCCEE
ALAIGTRPDCINEEVLDLLEEMNKKVYTWVELGLQTIHDDTARSFNRGYDLEVFDKAMEG
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LKSRGIDTVVHCIFGLPGESKEQMLETVDYVSRCGAQGIKLHLLHLMEGTRMVKDYEEGR
HHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
LKFLTQEEYVDLICTAISRIPQNMVIHRLTGDAPRQLLIGPMWSLKKWEVLNAIDNALED
EEEECHHHHHHHHHHHHHHCCHHHEEHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
NDIYQGKNFEE
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]