| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yutK [H]
Identifier: 18311478
GI number: 18311478
Start: 2857918
End: 2859144
Strand: Direct
Name: yutK [H]
Synonym: CPE2496
Alternate gene names: 18311478
Gene position: 2857918-2859144 (Clockwise)
Preceding gene: 18311477
Following gene: 18311480
Centisome position: 94.28
GC content: 35.62
Gene sequence:
>1227_bases GTGGATAGGTTTATTGGTGTAATCGGTCTTATTTGTATTATTGGTATAGCTGTTCTTTTTTCTGAAAACAGAAAGAAGAT CAACTGGAGATTGGTTGGAACAGGTCTTTTATTACAAATTATTTTCGCTTTATTAATCCTAAAAGTTCCTGCTGGTAGAG CAGTATTTGAATGGATTAGTAACGGAATAACTAAGTTATTAGATTTTACTAAAGAAGGTAGTTCATTCTTATTTGGACCA TTACTTGATACAGACAAATTCGGTATGATATTTGCTCTACAAGTATTACCAACTATTATCTTCTTCTCATCATTAATGAG TGTACTTTATCATTTAGGTATAGTTCAAGTAGTAGTTAAAGTTATTGCTAAGGGTGTTGCTAAAGTATTAGGAACAAGTG GTGCTGAAACTTTCAGTGCAGTTGGTAATATCTTCTTAGGCCAAACAGAGGCTCCTCTACTAGTTAAACCATACATAAAG AACATGACTAGATCAGAAATATGTGCAATCATGGTAGGTGGTATGGCTACTGTTGCCGGTGGTGTTATGGCTGGTTATGT AGCTATGGGTGTTAACGCTGGTAACTTATTAGCAGCATCAATCATGGCAGCTCCTGCTGGATTAATATTAGCTAAAATAT TAGTTCCTGAAACTGAAGTTCCTGAAACTAAAGGTGGCGGAACTTTAGAACTTAAAGTTGAAAGTGAAAATGTTATTGAA GCTGCTGCAAACGGCGCTTCAGAAGGTTTAGGATTAGCTTTAAACGTTGGTGCTATGCTTCTTGCATTCGTTGCTCTTAT AGCTATGATCAATGCTTTATTTGGAGCAATAGGTGGAATATTTGGTGCACCTTGGTTAAGCTTAAACTGGATTCTTGGTA GATTATTCTCTCCATTAGCATTCATAATGGGAGTTCCAACTAAAGACGTTTTCGCAGCTGGAGACTTACTAGGAATTAAA TTAGCAGTTAACGAATTCTTAGCTTACTCACAATTATCAAACTACATAGCAAGCGGAACTTTAGAACCTAAGACTATAAT GATATTAACTTATGCTCTTTGTGGATTCGCTAACTTAAGTTCAGTTGCTATACAATTAGGTGGTATTGGTGGATTAGCTC CAGAAAAGAAACCAATTATAGCTAAGTTAGGATTCAAAGCACTTTTAGGTGGTGTATTAGCTACTTGTATGACAGCTACT ATAGCAGGTATCTTATTTAGTGCTTAA
Upstream 100 bases:
>100_bases AACATTATAAAAGAGATTTAATAAAAAGTTAAATTAATATATTTCTTAACTTTTGTTAAATATAAAATTAGTATAAAAAC ATAAGAAAAGGAGAATAAAT
Downstream 100 bases:
>100_bases TAATTAGAAAAATTTAAATTACTTAAAAATAAAAGAACATTCTTCAATTGAAGAATGTTCTTTTTATTTAAACTATTATT TAATAACAACTAATTCTTTG
Product: nucleoside transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MDRFIGVIGLICIIGIAVLFSENRKKINWRLVGTGLLLQIIFALLILKVPAGRAVFEWISNGITKLLDFTKEGSSFLFGP LLDTDKFGMIFALQVLPTIIFFSSLMSVLYHLGIVQVVVKVIAKGVAKVLGTSGAETFSAVGNIFLGQTEAPLLVKPYIK NMTRSEICAIMVGGMATVAGGVMAGYVAMGVNAGNLLAASIMAAPAGLILAKILVPETEVPETKGGGTLELKVESENVIE AAANGASEGLGLALNVGAMLLAFVALIAMINALFGAIGGIFGAPWLSLNWILGRLFSPLAFIMGVPTKDVFAAGDLLGIK LAVNEFLAYSQLSNYIASGTLEPKTIMILTYALCGFANLSSVAIQLGGIGGLAPEKKPIIAKLGFKALLGGVLATCMTAT IAGILFSA
Sequences:
>Translated_408_residues MDRFIGVIGLICIIGIAVLFSENRKKINWRLVGTGLLLQIIFALLILKVPAGRAVFEWISNGITKLLDFTKEGSSFLFGP LLDTDKFGMIFALQVLPTIIFFSSLMSVLYHLGIVQVVVKVIAKGVAKVLGTSGAETFSAVGNIFLGQTEAPLLVKPYIK NMTRSEICAIMVGGMATVAGGVMAGYVAMGVNAGNLLAASIMAAPAGLILAKILVPETEVPETKGGGTLELKVESENVIE AAANGASEGLGLALNVGAMLLAFVALIAMINALFGAIGGIFGAPWLSLNWILGRLFSPLAFIMGVPTKDVFAAGDLLGIK LAVNEFLAYSQLSNYIASGTLEPKTIMILTYALCGFANLSSVAIQLGGIGGLAPEKKPIIAKLGFKALLGGVLATCMTAT IAGILFSA >Mature_408_residues MDRFIGVIGLICIIGIAVLFSENRKKINWRLVGTGLLLQIIFALLILKVPAGRAVFEWISNGITKLLDFTKEGSSFLFGP LLDTDKFGMIFALQVLPTIIFFSSLMSVLYHLGIVQVVVKVIAKGVAKVLGTSGAETFSAVGNIFLGQTEAPLLVKPYIK NMTRSEICAIMVGGMATVAGGVMAGYVAMGVNAGNLLAASIMAAPAGLILAKILVPETEVPETKGGGTLELKVESENVIE AAANGASEGLGLALNVGAMLLAFVALIAMINALFGAIGGIFGAPWLSLNWILGRLFSPLAFIMGVPTKDVFAAGDLLGIK LAVNEFLAYSQLSNYIASGTLEPKTIMILTYALCGFANLSSVAIQLGGIGGLAPEKKPIIAKLGFKALLGGVLATCMTAT IAGILFSA
Specific function: Unknown
COG id: COG1972
COG function: function code F; Nucleoside permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family [H]
Homologues:
Organism=Homo sapiens, GI227116277, Length=412, Percent_Identity=41.0194174757282, Blast_Score=301, Evalue=6e-82, Organism=Homo sapiens, GI42542381, Length=412, Percent_Identity=39.5631067961165, Blast_Score=297, Evalue=1e-80, Organism=Homo sapiens, GI11545853, Length=413, Percent_Identity=39.9515738498789, Blast_Score=283, Evalue=3e-76, Organism=Escherichia coli, GI1788485, Length=410, Percent_Identity=42.9268292682927, Blast_Score=307, Evalue=9e-85, Organism=Escherichia coli, GI1788488, Length=410, Percent_Identity=43.4146341463415, Blast_Score=288, Evalue=6e-79, Organism=Escherichia coli, GI1788737, Length=406, Percent_Identity=31.2807881773399, Blast_Score=184, Evalue=8e-48, Organism=Caenorhabditis elegans, GI17560276, Length=395, Percent_Identity=35.9493670886076, Blast_Score=250, Evalue=1e-66, Organism=Caenorhabditis elegans, GI71991794, Length=413, Percent_Identity=35.8353510895884, Blast_Score=240, Evalue=9e-64, Organism=Caenorhabditis elegans, GI25146537, Length=211, Percent_Identity=36.4928909952607, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI45552519, Length=387, Percent_Identity=37.984496124031, Blast_Score=282, Evalue=2e-76, Organism=Drosophila melanogaster, GI45552517, Length=387, Percent_Identity=37.984496124031, Blast_Score=282, Evalue=3e-76, Organism=Drosophila melanogaster, GI19921868, Length=387, Percent_Identity=37.984496124031, Blast_Score=282, Evalue=3e-76, Organism=Drosophila melanogaster, GI281360430, Length=404, Percent_Identity=34.9009900990099, Blast_Score=238, Evalue=6e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008276 - InterPro: IPR018270 - InterPro: IPR011642 - InterPro: IPR011657 - InterPro: IPR002668 [H]
Pfam domain/function: PF07670 Gate; PF07662 Nucleos_tra2_C; PF01773 Nucleos_tra2_N [H]
EC number: NA
Molecular weight: Translated: 42444; Mature: 42444
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRFIGVIGLICIIGIAVLFSENRKKINWRLVGTGLLLQIIFALLILKVPAGRAVFEWIS CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHH NGITKLLDFTKEGSSFLFGPLLDTDKFGMIFALQVLPTIIFFSSLMSVLYHLGIVQVVVK HHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIAKGVAKVLGTSGAETFSAVGNIFLGQTEAPLLVKPYIKNMTRSEICAIMVGGMATVAG HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEECHHHHCCCHHHHHHHHHCCHHHHHH GVMAGYVAMGVNAGNLLAASIMAAPAGLILAKILVPETEVPETKGGGTLELKVESENVIE HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHH AAANGASEGLGLALNVGAMLLAFVALIAMINALFGAIGGIFGAPWLSLNWILGRLFSPLA HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH FIMGVPTKDVFAAGDLLGIKLAVNEFLAYSQLSNYIASGTLEPKTIMILTYALCGFANLS HHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH SVAIQLGGIGGLAPEKKPIIAKLGFKALLGGVLATCMTATIAGILFSA HHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDRFIGVIGLICIIGIAVLFSENRKKINWRLVGTGLLLQIIFALLILKVPAGRAVFEWIS CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHH NGITKLLDFTKEGSSFLFGPLLDTDKFGMIFALQVLPTIIFFSSLMSVLYHLGIVQVVVK HHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIAKGVAKVLGTSGAETFSAVGNIFLGQTEAPLLVKPYIKNMTRSEICAIMVGGMATVAG HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEECHHHHCCCHHHHHHHHHCCHHHHHH GVMAGYVAMGVNAGNLLAASIMAAPAGLILAKILVPETEVPETKGGGTLELKVESENVIE HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHH AAANGASEGLGLALNVGAMLLAFVALIAMINALFGAIGGIFGAPWLSLNWILGRLFSPLA HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH FIMGVPTKDVFAAGDLLGIKLAVNEFLAYSQLSNYIASGTLEPKTIMILTYALCGFANLS HHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH SVAIQLGGIGGLAPEKKPIIAKLGFKALLGGVLATCMTATIAGILFSA HHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]