Click here to switch to the map view.

The map label for this gene is ykfA [H]

Identifier: 18311440

GI number: 18311440

Start: 2803902

End: 2804810

Strand: Direct

Name: ykfA [H]

Synonym: CPE2458

Alternate gene names: 18311440

Gene position: 2803902-2804810 (Clockwise)

Preceding gene: 18311439

Following gene: 18311442

Centisome position: 92.49

GC content: 27.72

Gene sequence:

>909_bases
ATGCTCTCTATTTTTTTAGGAGGTTTTATGGTGAAATTTCAAAAATTAAAAATTGGTGATACTATAGGTATTGTTTCCCC
TGCCAGTGGAGATAGTGCTGATGTAATAAACTATAATATATCCTCATTTAAAAATCTCGGATTTAAAATTAAAGAAGGAA
AATATTTAAGAAGAAAAAATGATTATCTAGCTGCTTCTGACAAAGAAAGAGCTGAAGATTTAATGGAGATGTTTAAGAAT
AAGGAAGTTAAAGCAATAATAGCTTATAGAGGTGGGTATGGATGTATAAGAATGTTACCCTATTTAGATATGGGAGTAAT
TAAAAAAAATCCTAAAATTTTATGTGGTTATAGTGATTTAACAGTTCTCTTAAATTATTTATCTCAAAAGACAGGCTTAA
TAACGTTTCATGGACCTATGATAAATTCTAAAATTAGTTCAGATGAAATAACTAAAAATAGCTTTCTATCACTGCTTACT
GATGAAAGCAATTTAATTAACATATCTACAAAGGATTTTAAGGTGGAAAATAAGGAACTATTTAGAGGGATTCTTTGCGG
TGGAAACCTAACTATGATATGTAGCACCTTAGGAACTCCTTATGAAATAAATACTAGAAATAAAATTCTCATGATTGAAG
ATGTAAATGAAGAGAATTATGCTATAGATAGATACTTAATGCAATTAAAACTTTCAGGTAAACTAGATTCTTGTAGAGCT
TTTTTAATAGGCCATTTCACCCCATATAATCCAAAAACAATTAATACTATACTTTCTATACTATTACCATATAAAAAACC
AATTATATATAATATTCCTTTTGGTCATGACTATCCTAATATAACCTTACCAATAGGATCATCAATTCTTTTCGACGCAG
CTAAAGATAAACTAATAATAAAATATTAA

Upstream 100 bases:

>100_bases
ATAGCATTTATATTATATAAAAAAGATATGTTTTAAATTTATCTGTAACCATAAAAAGATTTTTGCATATAATTAACTAA
AAGATTATTGAGAGCAATTT

Downstream 100 bases:

>100_bases
ATGTTTCTTATGGTTAATAGTGAAATTAATATTCTAGCTAAGGATAAACTAATATCATAACCATCAATAAAACATGCAGA
TTGCACTAAGACTATAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: LD-carboxypeptidase [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MLSIFLGGFMVKFQKLKIGDTIGIVSPASGDSADVINYNISSFKNLGFKIKEGKYLRRKNDYLAASDKERAEDLMEMFKN
KEVKAIIAYRGGYGCIRMLPYLDMGVIKKNPKILCGYSDLTVLLNYLSQKTGLITFHGPMINSKISSDEITKNSFLSLLT
DESNLINISTKDFKVENKELFRGILCGGNLTMICSTLGTPYEINTRNKILMIEDVNEENYAIDRYLMQLKLSGKLDSCRA
FLIGHFTPYNPKTINTILSILLPYKKPIIYNIPFGHDYPNITLPIGSSILFDAAKDKLIIKY

Sequences:

>Translated_302_residues
MLSIFLGGFMVKFQKLKIGDTIGIVSPASGDSADVINYNISSFKNLGFKIKEGKYLRRKNDYLAASDKERAEDLMEMFKN
KEVKAIIAYRGGYGCIRMLPYLDMGVIKKNPKILCGYSDLTVLLNYLSQKTGLITFHGPMINSKISSDEITKNSFLSLLT
DESNLINISTKDFKVENKELFRGILCGGNLTMICSTLGTPYEINTRNKILMIEDVNEENYAIDRYLMQLKLSGKLDSCRA
FLIGHFTPYNPKTINTILSILLPYKKPIIYNIPFGHDYPNITLPIGSSILFDAAKDKLIIKY
>Mature_302_residues
MLSIFLGGFMVKFQKLKIGDTIGIVSPASGDSADVINYNISSFKNLGFKIKEGKYLRRKNDYLAASDKERAEDLMEMFKN
KEVKAIIAYRGGYGCIRMLPYLDMGVIKKNPKILCGYSDLTVLLNYLSQKTGLITFHGPMINSKISSDEITKNSFLSLLT
DESNLINISTKDFKVENKELFRGILCGGNLTMICSTLGTPYEINTRNKILMIEDVNEENYAIDRYLMQLKLSGKLDSCRA
FLIGHFTPYNPKTINTILSILLPYKKPIIYNIPFGHDYPNITLPIGSSILFDAAKDKLIIKY

Specific function: May be involved in the degradation of peptidoglycan by catalyzing the cleavage of the terminal D-alanine residue from cytoplasmic murein peptides [H]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=274, Percent_Identity=29.5620437956204, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 34057; Mature: 34057

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIFLGGFMVKFQKLKIGDTIGIVSPASGDSADVINYNISSFKNLGFKIKEGKYLRRKN
CEEEEECCEEEEEEEEEECCEEEEECCCCCCCCEEEEEEHHHHHHCCEEEECCCEEECCC
DYLAASDKERAEDLMEMFKNKEVKAIIAYRGGYGCIRMLPYLDMGVIKKNPKILCGYSDL
CEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHCCCCEEECCCCEEECCHHH
TVLLNYLSQKTGLITFHGPMINSKISSDEITKNSFLSLLTDESNLINISTKDFKVENKEL
HHHHHHHHHCCCEEEEECCEECCCCCCCCCCHHHHHEEEECCCCEEEEECCCEEECCHHH
FRGILCGGNLTMICSTLGTPYEINTRNKILMIEDVNEENYAIDRYLMQLKLSGKLDSCRA
HEEEEECCCCEEHEECCCCCEEECCCCEEEEEEECCCCCHHHHHHEEEEEECCCCCCEEE
FLIGHFTPYNPKTINTILSILLPYKKPIIYNIPFGHDYPNITLPIGSSILFDAAKDKLII
EEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCEEEEECCCCCEEE
KY
EC
>Mature Secondary Structure
MLSIFLGGFMVKFQKLKIGDTIGIVSPASGDSADVINYNISSFKNLGFKIKEGKYLRRKN
CEEEEECCEEEEEEEEEECCEEEEECCCCCCCCEEEEEEHHHHHHCCEEEECCCEEECCC
DYLAASDKERAEDLMEMFKNKEVKAIIAYRGGYGCIRMLPYLDMGVIKKNPKILCGYSDL
CEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHCCCCEEECCCCEEECCHHH
TVLLNYLSQKTGLITFHGPMINSKISSDEITKNSFLSLLTDESNLINISTKDFKVENKEL
HHHHHHHHHCCCEEEEECCEECCCCCCCCCCHHHHHEEEECCCCEEEEECCCEEECCHHH
FRGILCGGNLTMICSTLGTPYEINTRNKILMIEDVNEENYAIDRYLMQLKLSGKLDSCRA
HEEEEECCCCEEHEECCCCCEEECCCCEEEEEEECCCCCHHHHHHEEEEEECCCCCCEEE
FLIGHFTPYNPKTINTILSILLPYKKPIIYNIPFGHDYPNITLPIGSSILFDAAKDKLII
EEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCEEEEECCCCCEEE
KY
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]