| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is abgB [H]
Identifier: 18311437
GI number: 18311437
Start: 2800923
End: 2802092
Strand: Direct
Name: abgB [H]
Synonym: CPE2455
Alternate gene names: 18311437
Gene position: 2800923-2802092 (Clockwise)
Preceding gene: 18311427
Following gene: 18311439
Centisome position: 92.4
GC content: 30.6
Gene sequence:
>1170_bases ATGAGACAGGAAGTTATTTCTTATTTATCTACAGAAAAAGAGGCTCTCTTTAATCTTTGTAAATTTCTGCATGATAATCC TGAAGATAGTTACAAAGAATATGACGCTTGCAAATATATATGTAATTTCCTAAGAGATAGAGATTTTGATGTAAGAGAAA AATTTTTAGATTTAGATACTGCTTTCTATGCTAAGAAAGGAAATGGATACCCTAAAATATGCTTTTTATGCGAATATGAT GCTATTAAATCTAAGGGAGGACATATAACAGGTCATAATCTTCTTACTACTATATCAATTACAAGCGCCTTAGGATTAAG CAAGGTAATTGAGAAGTCTGGTGGAACAGTAATATTAATAGGATGTCCTGGAGAATATTTAGGTGGAACTAAGTCTACTT ATGTTAGACAAGGTATTTTTGATGATATAGATGTGGTATTAACAGCTCACCCAGATATAGTAACCTCTGAAAGTGGTACT TCAAAGGCAATTATACCTTTAAAAGTAACTTTTAAAGGTCATGATGGATTAAGTTTCTTAGATTTTGATAGTTTTACATC TTTGGATGGTACTATGCTAACTTTTAATGTAATAAACGCTTTATCTAAGGGCTTCTGTAAGAAAGCTAACATACACACTA TTTTATCTCAAGGAGGCGTTACACCTCTTCTAAGACCTGTTGAATCAGAAGGTAAATTATATATAAGAGCAGAAAGTACA AAAACTGCAAAATGTATAGAAAATAAAATAAGAAACCTTGTTGCTTGTATTTCTGACACAATGAACTTAGAAAGTTGTGT TGAACTTTATGAACCACCTAATGAAGAGCTTTTATCTAATCAAATATTAAATAGATTATATAGTCATAATTTAAAAGAAA ACGGAATAATAAACATAGGAAAACCAAGAGATATAGATGCTGGTCTTTCATTAGGAACTGTAAGTCACAAGGTACCTTGT ATTCATCCTTATATAAACATAGTTGATAATGTAAATATTGACTATGGAACTAAAGAATTTGCAGATGCAACAATATCATC CTTTGCTCAAGAACAAGCGCTTTCAGCTTCTTATGCCCTTATTTCAACAGCTTTAGATCTTATAGAAAGCGATTTTCTTC TTTCAGAGGTTAAAGAAACCTTCAATATGTCTAAGGAAAATTTATATTAA
Upstream 100 bases:
>100_bases TATACATAATTTAGAATGAAAAATATTTAAATAAATAAAAATTAATATTTTTTCTATTGTAGCACAAACTAATCCTATAA ATATTTAGGAGGTTTTTTCA
Downstream 100 bases:
>100_bases AAAAAGAGAGTCAAAAGACTCTCTTTTCTTAAATAGCTAAGTTTTTTTCTAATTTATCAACAAGTGTTTTACTTGGCTTA AAATAGAATTTATTATATCC
Product: amidohydrolase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MRQEVISYLSTEKEALFNLCKFLHDNPEDSYKEYDACKYICNFLRDRDFDVREKFLDLDTAFYAKKGNGYPKICFLCEYD AIKSKGGHITGHNLLTTISITSALGLSKVIEKSGGTVILIGCPGEYLGGTKSTYVRQGIFDDIDVVLTAHPDIVTSESGT SKAIIPLKVTFKGHDGLSFLDFDSFTSLDGTMLTFNVINALSKGFCKKANIHTILSQGGVTPLLRPVESEGKLYIRAEST KTAKCIENKIRNLVACISDTMNLESCVELYEPPNEELLSNQILNRLYSHNLKENGIINIGKPRDIDAGLSLGTVSHKVPC IHPYINIVDNVNIDYGTKEFADATISSFAQEQALSASYALISTALDLIESDFLLSEVKETFNMSKENLY
Sequences:
>Translated_389_residues MRQEVISYLSTEKEALFNLCKFLHDNPEDSYKEYDACKYICNFLRDRDFDVREKFLDLDTAFYAKKGNGYPKICFLCEYD AIKSKGGHITGHNLLTTISITSALGLSKVIEKSGGTVILIGCPGEYLGGTKSTYVRQGIFDDIDVVLTAHPDIVTSESGT SKAIIPLKVTFKGHDGLSFLDFDSFTSLDGTMLTFNVINALSKGFCKKANIHTILSQGGVTPLLRPVESEGKLYIRAEST KTAKCIENKIRNLVACISDTMNLESCVELYEPPNEELLSNQILNRLYSHNLKENGIINIGKPRDIDAGLSLGTVSHKVPC IHPYINIVDNVNIDYGTKEFADATISSFAQEQALSASYALISTALDLIESDFLLSEVKETFNMSKENLY >Mature_389_residues MRQEVISYLSTEKEALFNLCKFLHDNPEDSYKEYDACKYICNFLRDRDFDVREKFLDLDTAFYAKKGNGYPKICFLCEYD AIKSKGGHITGHNLLTTISITSALGLSKVIEKSGGTVILIGCPGEYLGGTKSTYVRQGIFDDIDVVLTAHPDIVTSESGT SKAIIPLKVTFKGHDGLSFLDFDSFTSLDGTMLTFNVINALSKGFCKKANIHTILSQGGVTPLLRPVESEGKLYIRAEST KTAKCIENKIRNLVACISDTMNLESCVELYEPPNEELLSNQILNRLYSHNLKENGIINIGKPRDIDAGLSLGTVSHKVPC IHPYINIVDNVNIDYGTKEFADATISSFAQEQALSASYALISTALDLIESDFLLSEVKETFNMSKENLY
Specific function: Required but not essential for aminobenzoyl-glutamate utilization. May participate in hydrolysis of aminobenzoyl- glutamate to aminobenzoate, either alone or in combination with AbgA [H]
COG id: COG1473
COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI58082085, Length=396, Percent_Identity=28.030303030303, Blast_Score=124, Evalue=1e-28, Organism=Escherichia coli, GI1787598, Length=275, Percent_Identity=28.3636363636364, Blast_Score=107, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017145 - InterPro: IPR010168 - InterPro: IPR002933 - InterPro: IPR011650 [H]
Pfam domain/function: PF01546 Peptidase_M20 [H]
EC number: NA
Molecular weight: Translated: 43092; Mature: 43092
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQEVISYLSTEKEALFNLCKFLHDNPEDSYKEYDACKYICNFLRDRDFDVREKFLDLDT CHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AFYAKKGNGYPKICFLCEYDAIKSKGGHITGHNLLTTISITSALGLSKVIEKSGGTVILI HHHEECCCCCCCEEEEECCHHHHCCCCEEECCHHEEHHHHHHHHHHHHHHHCCCCEEEEE GCPGEYLGGTKSTYVRQGIFDDIDVVLTAHPDIVTSESGTSKAIIPLKVTFKGHDGLSFL ECCHHHHCCCHHHHHHHCCCCCCEEEEECCCCEEECCCCCCEEEEEEEEEEECCCCCEEE DFDSFTSLDGTMLTFNVINALSKGFCKKANIHTILSQGGVTPLLRPVESEGKLYIRAEST CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHCCCCCCCEEEEEECCC KTAKCIENKIRNLVACISDTMNLESCVELYEPPNEELLSNQILNRLYSHNLKENGIINIG CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECC KPRDIDAGLSLGTVSHKVPCIHPYINIVDNVNIDYGTKEFADATISSFAQEQALSASYAL CCCCCCCCCCCCCCCCCCCEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH ISTALDLIESDFLLSEVKETFNMSKENLY HHHHHHHHHHHHHHHHHHHHHCCCHHCCC >Mature Secondary Structure MRQEVISYLSTEKEALFNLCKFLHDNPEDSYKEYDACKYICNFLRDRDFDVREKFLDLDT CHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AFYAKKGNGYPKICFLCEYDAIKSKGGHITGHNLLTTISITSALGLSKVIEKSGGTVILI HHHEECCCCCCCEEEEECCHHHHCCCCEEECCHHEEHHHHHHHHHHHHHHHCCCCEEEEE GCPGEYLGGTKSTYVRQGIFDDIDVVLTAHPDIVTSESGTSKAIIPLKVTFKGHDGLSFL ECCHHHHCCCHHHHHHHCCCCCCEEEEECCCCEEECCCCCCEEEEEEEEEEECCCCCEEE DFDSFTSLDGTMLTFNVINALSKGFCKKANIHTILSQGGVTPLLRPVESEGKLYIRAEST CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHCCCCCCCEEEEEECCC KTAKCIENKIRNLVACISDTMNLESCVELYEPPNEELLSNQILNRLYSHNLKENGIINIG CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECC KPRDIDAGLSLGTVSHKVPCIHPYINIVDNVNIDYGTKEFADATISSFAQEQALSASYAL CCCCCCCCCCCCCCCCCCCEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH ISTALDLIESDFLLSEVKETFNMSKENLY HHHHHHHHHHHHHHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 9829935 [H]