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The map label for this gene is radA [H]

Identifier: 18311415

GI number: 18311415

Start: 2781485

End: 2782846

Strand: Reverse

Name: radA [H]

Synonym: CPE2433

Alternate gene names: 18311415

Gene position: 2782846-2781485 (Counterclockwise)

Preceding gene: 18311416

Following gene: 18311414

Centisome position: 91.8

GC content: 32.53

Gene sequence:

>1362_bases
GTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAAATGGATGGGGAAATGTCCAGAATG
TAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTTCTCCTAAGGTTGAAAGACAAATTG
GTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACTGGAATTGGTGAATTAAATAGAGTA
TTAGGTGGAGGGCTTGTTAAGGGGTCACTTACACTTATATCTGGTGATCCTGGGATAGGTAAATCTACACTTCTTTTACA
AACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGGGAAGAATCAGAAGAACAAATAAAAATAA
GAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAATCTTGATGTAATAGAAGCATATATA
GATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGAAACAGTTTCTTCAGCACCAGGAAG
TGTTTCACAGGTTAAGGAATGCTCAAATGCTGTAATGAGAATTGCTAAAGGAAAAAATATTCCTTTATTTATAGTTGCTC
ACGTTACTAAGCAAGGGGATTTAGCAGGACCAAGAGTATTAGAACACATGGTGGATACTGTATTATCCTTTGAAGGGGAA
AGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGCACTACGGCTGAAATAGGTGTTTTTGAAATGCG
TGGAGAGGGATTAATGCAGGTTTATGATCCATCTAGCATGTTTTTAGAGGACACTAGTTTTAATCAAGAAGGGTCAGTTG
TAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCATCTGAAACAAAAGCAGTTATGCCT
AGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATTAGAAAAAAAATTAAGAGTTCCTTT
TTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTACAGCAGACTTAGGAATTGCTATTT
CACTTGTATCCTCTGTTAAAGGTAAAGCAGCTAGCTTAGAAAAATTAGTTGTTGTAGGCGAGGTTGGGTTAACAGGTGAA
ATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATTTTTAAATGCAGTTGTTCCTTATAG
AAGTTTAGAAAAATTAAAGGGAAGTAAATTAAACCTTATAGGAGTAAAAACTGTAAGGGAAGCAATAGGAAAGATATTTT
AA

Upstream 100 bases:

>100_bases
AAGTATGTGATTAGTTATAATGATATGATATGATTATTTAAGGATATATTAGGAAATAATTAGATTTGTACGTAAAATGA
AGAAATATGGAGTTGGTAAA

Downstream 100 bases:

>100_bases
GATGGATAGGTGTGAGTAAATGAGAACTGTACATGATGATGAGTTAAAAAAAATATTAAAAATAATGAGTCCAGGTACTT
CTTTAAGGGAAGGATTAGAT

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRV
LGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYI
DKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMP
RRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVVGEVGLTGE
IRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Sequences:

>Translated_453_residues
MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRV
LGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYI
DKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMP
RRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVVGEVGLTGE
IRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF
>Mature_452_residues
AKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRVL
GGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYID
KLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGER
TEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMPR
RTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVVGEVGLTGEI
RPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=461, Percent_Identity=41.4316702819957, Blast_Score=366, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49821; Mature: 49690

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIK
CCCCEEEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
EIKSGEKERYDTGIGELNRVLGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVL
HHHCCCHHHHHCCHHHHHHHHCCCEEECEEEEEECCCCCCCCEEEEEEHHHHHHHHCCEE
YVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYIDKLEPAFIIIDSIQTIYRET
EEECCCCCCEEEEECCEEEEEHHHEEEEECCCHHHHHHHHHHCCCEEEEEHHHHHHHHHH
VSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
HHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEG
CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCHHEEECCCCCCCCCEEEEEECC
TRPILVEIQSLASETKAVMPRRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGL
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCEEEEEEECE
EIEGTTADLGIAISLVSSVKGKAASLEKLVVVGEVGLTGEIRPISNCDRILNEAEKMGFL
EECCCCCHHHHHHHHHHHHCCCHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCHH
NAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF
HHHCCHHHHHHHCCCCEEEEEHHHHHHHHHCCC
>Mature Secondary Structure 
AKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIK
CCCEEEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
EIKSGEKERYDTGIGELNRVLGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVL
HHHCCCHHHHHCCHHHHHHHHCCCEEECEEEEEECCCCCCCCEEEEEEHHHHHHHHCCEE
YVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYIDKLEPAFIIIDSIQTIYRET
EEECCCCCCEEEEECCEEEEEHHHEEEEECCCHHHHHHHHHHCCCEEEEEHHHHHHHHHH
VSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
HHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEG
CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCHHEEECCCCCCCCCEEEEEECC
TRPILVEIQSLASETKAVMPRRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGL
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCEEEEEEECE
EIEGTTADLGIAISLVSSVKGKAASLEKLVVVGEVGLTGEIRPISNCDRILNEAEKMGFL
EECCCCCHHHHHHHHHHHHCCCHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCHH
NAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF
HHHCCHHHHHHHCCCCEEEEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]