| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is secA [H]
Identifier: 18311153
GI number: 18311153
Start: 2489545
End: 2492067
Strand: Reverse
Name: secA [H]
Synonym: CPE2171
Alternate gene names: 18311153
Gene position: 2492067-2489545 (Counterclockwise)
Preceding gene: 18311154
Following gene: 18311152
Centisome position: 82.21
GC content: 32.18
Gene sequence:
>2523_bases ATGGGATTATTTGATAAAATATTTGGAAGTTATAGCGATAGAGAAGTTAAGAGAATAACACCTATTGTAGACAAAATAGA TTCACTTGGGCCTGAAATGGAAAAACTATCTGATGAAGAATTGAAGCAAAAAACATTTGAATTTAAGGATAGATATGCTA AAGGAGAAAGCTTAGATGATATGCTTCCAGAAGCTTTTGCTGTTTGTAGAGAAGCATCAACAAGAGTTTTAGGAATGAAA CACTATAGAGAGCAATTAATTGGTGGTATAGTTTTACATCAAGGAAGAATAGCAGAAATGAAAACTGGTGAAGGTAAAAC ATTAGTTGCTACTTTACCTGTTTATTTAAATGCTATAGCTGGTAAAGGTGTTCATGTAATTACAGTTAATGATTATCTTG CAACAAGAGATAAAGAGTGGATGGGGCAATTATATGAATTCTTAGGATTAACTACTGGGGTTATAGTTCATGGATTAACT AATGACCAAAGAAGAGAAGCATATAATGCTGATATAACTTATGGAACAAATAATGAATTTGGATTTGATTATTTAAGAGA TAACATGGTTATTTATAAAGAAGAAAGAGTTCAAAGACCGTTACACTACTGTATAGTGGATGAGGTTGACTCAATTCTTA TAGATGAAGCAAGAACTCCTCTTATAATTTCAGGTGCAGGAAGTAAATCAACAGATCTTTATAAGATAGCTGATTTCTTT GTTAAGAAATTAAGAGAAGAAGAAGATTATACAATAGATGAAAAAGCACATGCTGCAATGCTTACTGACAAAGGAGTTGC AGAGGCAGAAAAGGCTTTTGGAATAGAAAACTACGCAGATGCTAATAATATGGAATTACAACATCATATTACTCAAGCCT TAAAAGCTAACTATGTAATGAAGAGAGATAAAGATTACATGGTTAAAGATGATGAAATAGCTATAGTTGATGAATTTACA GGAAGACTTATGGAAGGTAGAAGATATTCAGATGGTCTTCACCAAGCTATTGAAGCTAAGGAAGGTGTTAAAGTTCAAAG AGAATCTAAGACTTTAGCAACTATAACATTCCAAAACTATTTCAGAATGTATACTAAATTAGCAGGTATGACAGGTACTG CGCTTACTGAGGAAACTGAATTTAGAGAAATATATGGATTAGACGTTGTTGTTATTCCAACTCATAGACCAGTTCAAAGA CAAGACCACTCAGATTTAGTATTTAAAACTGCTAAAGGAAAATATGATGCCATAGTGGAAGAAATAATAGAAACTCATAA GACAGGTCAACCAGTCTTAGTTGGTACAACTAGTATAGAAAAATCAGAATATCTTTCATCTTTATTAAAGAAAAAAGGTG TTCCGCATAAGGTTTTAAATGCTAGATATCATGAGCAAGAAGCTGAAATTGTATCTCATGCAGGTGAGTTAGGTAACATA ACAATTGCAACTAACATGGCTGGTAGAGGTACTGATATTAAACTTGGAGAAGGTGTTTTAGAAGTTGGTGGTTTAAAAAT CATAGGTACTGAAAGACACGAATCAAGAAGAATAGATAACCAGCTTAGAGGACGTTCTGGTCGTCAAGGAGATAAAGGTC ATTCAAGATTCTATATCTCTTTAGAGGATGATTTAATGAGAATATTTGGCTCAGAAAAACTTCAATCTGTTGTTGATAGA TTAGGATTAGAAGAAACTGAGGCTATTGAAAGTAAAATGGTTACTAAATCAATAGAAAATGCTCAAAAGAAAGTAGAAGG TAATAACTTTGATATAAGAAAAACATTGTTAGGATATGATGATGTTATGAATAAACAAAGGGAAGTTATCTATAAGCAAA GATCACAAGTTTTAGAGGGTGAAAACTTAGAAGATAGCGTTCAAGCTATGATCGAAGATGTTATAACTAATGCTGTTCAA GCTCACTTAGGAAATATTGATGAAGATGATTTTGAAAAAGAACTTGGAGATTTAATAAAATACTTAGAAGATATAATGTT ACCACATGGTAAATTCACTGTAGAAGAATTAAAAACTAATTCAAATGAAGAAATTACTAGAAAATTCATTGAATGTGCTA GAGAAATCTACAAGGAAAAGGAAGAGTTCGTTGGCTCAGAGCAAATGAGAGAAATAGAAAGAGTTATAATCTTAAGAGTT GTTGACACTAAGTGGATGGATCACATAGATGATATGGATCACTTAAAACAAGGTATTGGATTAAGAGCATACAAACAACA AGATCCAATTCAAGCTTACCAAATGGAAGGTAGTGCTATGTTTGATGAAATGATAAATAATATAAAGATAGACACAGTAA GATACTTATTCCATGTAAAAGTTGAGGCTGAAAAACCTCAAAGAGAGAGAGTTGCTAAGGAAACAGGAGCAAGTCATGGT GGAGACTCTCAAGAAATAAAGAAAAAACCAGTTAAAAAAGAGCCTAAAGTAGGTAGAAATGATTTATGTCCATGTGGAAG TGGAAAAAAATATAAATCATGTTGTGGAAGAGAAGTAGTTTAA
Upstream 100 bases:
>100_bases TAATTTTTTTATAAAATTTAGAATAATGTATATATGTGTTATAATGAGATAATTATTAGAATATTAAGCATATAAGAAAG TAGAATTGAGGGATATTATA
Downstream 100 bases:
>100_bases TATAATTAAAAGCCTTTGCATTATTTGCAGAGGCTTTTAATTATAATTTTATTAATAGATAAAAATACTATGTTATGAAT TATAAATATAAAGCTAGAAT
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 839
Protein sequence:
>840_residues MGLFDKIFGSYSDREVKRITPIVDKIDSLGPEMEKLSDEELKQKTFEFKDRYAKGESLDDMLPEAFAVCREASTRVLGMK HYREQLIGGIVLHQGRIAEMKTGEGKTLVATLPVYLNAIAGKGVHVITVNDYLATRDKEWMGQLYEFLGLTTGVIVHGLT NDQRREAYNADITYGTNNEFGFDYLRDNMVIYKEERVQRPLHYCIVDEVDSILIDEARTPLIISGAGSKSTDLYKIADFF VKKLREEEDYTIDEKAHAAMLTDKGVAEAEKAFGIENYADANNMELQHHITQALKANYVMKRDKDYMVKDDEIAIVDEFT GRLMEGRRYSDGLHQAIEAKEGVKVQRESKTLATITFQNYFRMYTKLAGMTGTALTEETEFREIYGLDVVVIPTHRPVQR QDHSDLVFKTAKGKYDAIVEEIIETHKTGQPVLVGTTSIEKSEYLSSLLKKKGVPHKVLNARYHEQEAEIVSHAGELGNI TIATNMAGRGTDIKLGEGVLEVGGLKIIGTERHESRRIDNQLRGRSGRQGDKGHSRFYISLEDDLMRIFGSEKLQSVVDR LGLEETEAIESKMVTKSIENAQKKVEGNNFDIRKTLLGYDDVMNKQREVIYKQRSQVLEGENLEDSVQAMIEDVITNAVQ AHLGNIDEDDFEKELGDLIKYLEDIMLPHGKFTVEELKTNSNEEITRKFIECAREIYKEKEEFVGSEQMREIERVIILRV VDTKWMDHIDDMDHLKQGIGLRAYKQQDPIQAYQMEGSAMFDEMINNIKIDTVRYLFHVKVEAEKPQRERVAKETGASHG GDSQEIKKKPVKKEPKVGRNDLCPCGSGKKYKSCCGREVV
Sequences:
>Translated_840_residues MGLFDKIFGSYSDREVKRITPIVDKIDSLGPEMEKLSDEELKQKTFEFKDRYAKGESLDDMLPEAFAVCREASTRVLGMK HYREQLIGGIVLHQGRIAEMKTGEGKTLVATLPVYLNAIAGKGVHVITVNDYLATRDKEWMGQLYEFLGLTTGVIVHGLT NDQRREAYNADITYGTNNEFGFDYLRDNMVIYKEERVQRPLHYCIVDEVDSILIDEARTPLIISGAGSKSTDLYKIADFF VKKLREEEDYTIDEKAHAAMLTDKGVAEAEKAFGIENYADANNMELQHHITQALKANYVMKRDKDYMVKDDEIAIVDEFT GRLMEGRRYSDGLHQAIEAKEGVKVQRESKTLATITFQNYFRMYTKLAGMTGTALTEETEFREIYGLDVVVIPTHRPVQR QDHSDLVFKTAKGKYDAIVEEIIETHKTGQPVLVGTTSIEKSEYLSSLLKKKGVPHKVLNARYHEQEAEIVSHAGELGNI TIATNMAGRGTDIKLGEGVLEVGGLKIIGTERHESRRIDNQLRGRSGRQGDKGHSRFYISLEDDLMRIFGSEKLQSVVDR LGLEETEAIESKMVTKSIENAQKKVEGNNFDIRKTLLGYDDVMNKQREVIYKQRSQVLEGENLEDSVQAMIEDVITNAVQ AHLGNIDEDDFEKELGDLIKYLEDIMLPHGKFTVEELKTNSNEEITRKFIECAREIYKEKEEFVGSEQMREIERVIILRV VDTKWMDHIDDMDHLKQGIGLRAYKQQDPIQAYQMEGSAMFDEMINNIKIDTVRYLFHVKVEAEKPQRERVAKETGASHG GDSQEIKKKPVKKEPKVGRNDLCPCGSGKKYKSCCGREVV >Mature_839_residues GLFDKIFGSYSDREVKRITPIVDKIDSLGPEMEKLSDEELKQKTFEFKDRYAKGESLDDMLPEAFAVCREASTRVLGMKH YREQLIGGIVLHQGRIAEMKTGEGKTLVATLPVYLNAIAGKGVHVITVNDYLATRDKEWMGQLYEFLGLTTGVIVHGLTN DQRREAYNADITYGTNNEFGFDYLRDNMVIYKEERVQRPLHYCIVDEVDSILIDEARTPLIISGAGSKSTDLYKIADFFV KKLREEEDYTIDEKAHAAMLTDKGVAEAEKAFGIENYADANNMELQHHITQALKANYVMKRDKDYMVKDDEIAIVDEFTG RLMEGRRYSDGLHQAIEAKEGVKVQRESKTLATITFQNYFRMYTKLAGMTGTALTEETEFREIYGLDVVVIPTHRPVQRQ DHSDLVFKTAKGKYDAIVEEIIETHKTGQPVLVGTTSIEKSEYLSSLLKKKGVPHKVLNARYHEQEAEIVSHAGELGNIT IATNMAGRGTDIKLGEGVLEVGGLKIIGTERHESRRIDNQLRGRSGRQGDKGHSRFYISLEDDLMRIFGSEKLQSVVDRL GLEETEAIESKMVTKSIENAQKKVEGNNFDIRKTLLGYDDVMNKQREVIYKQRSQVLEGENLEDSVQAMIEDVITNAVQA HLGNIDEDDFEKELGDLIKYLEDIMLPHGKFTVEELKTNSNEEITRKFIECAREIYKEKEEFVGSEQMREIERVIILRVV DTKWMDHIDDMDHLKQGIGLRAYKQQDPIQAYQMEGSAMFDEMINNIKIDTVRYLFHVKVEAEKPQRERVAKETGASHGG DSQEIKKKPVKKEPKVGRNDLCPCGSGKKYKSCCGREVV
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular mo
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=897, Percent_Identity=51.1705685618729, Blast_Score=861, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 95577; Mature: 95446
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLFDKIFGSYSDREVKRITPIVDKIDSLGPEMEKLSDEELKQKTFEFKDRYAKGESLDD CCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHH MLPEAFAVCREASTRVLGMKHYREQLIGGIVLHQGRIAEMKTGEGKTLVATLPVYLNAIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEHHHHHHHHC GKGVHVITVNDYLATRDKEWMGQLYEFLGLTTGVIVHGLTNDQRREAYNADITYGTNNEF CCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHCCCCEEECCCCCC GFDYLRDNMVIYKEERVQRPLHYCIVDEVDSILIDEARTPLIISGAGSKSTDLYKIADFF CHHHHHCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHH VKKLREEEDYTIDEKAHAAMLTDKGVAEAEKAFGIENYADANNMELQHHITQALKANYVM HHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH KRDKDYMVKDDEIAIVDEFTGRLMEGRRYSDGLHQAIEAKEGVKVQRESKTLATITFQNY CCCCCCEECCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEHHHHH FRMYTKLAGMTGTALTEETEFREIYGLDVVVIPTHRPVQRQDHSDLVFKTAKGKYDAIVE HHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHH EIIETHKTGQPVLVGTTSIEKSEYLSSLLKKKGVPHKVLNARYHEQEAEIVSHAGELGNI HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE TIATNMAGRGTDIKLGEGVLEVGGLKIIGTERHESRRIDNQLRGRSGRQGDKGHSRFYIS EEEECCCCCCCCCCCCCCHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEE LEDDLMRIFGSEKLQSVVDRLGLEETEAIESKMVTKSIENAQKKVEGNNFDIRKTLLGYD EHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHH DVMNKQREVIYKQRSQVLEGENLEDSVQAMIEDVITNAVQAHLGNIDEDDFEKELGDLIK HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH YLEDIMLPHGKFTVEELKTNSNEEITRKFIECAREIYKEKEEFVGSEQMREIERVIILRV HHHHHHCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VDTKWMDHIDDMDHLKQGIGLRAYKQQDPIQAYQMEGSAMFDEMINNIKIDTVRYLFHVK HHHHHHHHHCCHHHHHHCCCCEECCCCCCCHHHHCCCHHHHHHHHHCCCHHEEEEEEEEE VEAEKPQRERVAKETGASHGGDSQEIKKKPVKKEPKVGRNDLCPCGSGKKYKSCCGREVV EECCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC >Mature Secondary Structure GLFDKIFGSYSDREVKRITPIVDKIDSLGPEMEKLSDEELKQKTFEFKDRYAKGESLDD CCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHH MLPEAFAVCREASTRVLGMKHYREQLIGGIVLHQGRIAEMKTGEGKTLVATLPVYLNAIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEHHHHHHHHC GKGVHVITVNDYLATRDKEWMGQLYEFLGLTTGVIVHGLTNDQRREAYNADITYGTNNEF CCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHCCCCEEECCCCCC GFDYLRDNMVIYKEERVQRPLHYCIVDEVDSILIDEARTPLIISGAGSKSTDLYKIADFF CHHHHHCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHH VKKLREEEDYTIDEKAHAAMLTDKGVAEAEKAFGIENYADANNMELQHHITQALKANYVM HHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH KRDKDYMVKDDEIAIVDEFTGRLMEGRRYSDGLHQAIEAKEGVKVQRESKTLATITFQNY CCCCCCEECCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEHHHHH FRMYTKLAGMTGTALTEETEFREIYGLDVVVIPTHRPVQRQDHSDLVFKTAKGKYDAIVE HHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHH EIIETHKTGQPVLVGTTSIEKSEYLSSLLKKKGVPHKVLNARYHEQEAEIVSHAGELGNI HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE TIATNMAGRGTDIKLGEGVLEVGGLKIIGTERHESRRIDNQLRGRSGRQGDKGHSRFYIS EEEECCCCCCCCCCCCCCHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEE LEDDLMRIFGSEKLQSVVDRLGLEETEAIESKMVTKSIENAQKKVEGNNFDIRKTLLGYD EHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHH DVMNKQREVIYKQRSQVLEGENLEDSVQAMIEDVITNAVQAHLGNIDEDDFEKELGDLIK HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH YLEDIMLPHGKFTVEELKTNSNEEITRKFIECAREIYKEKEEFVGSEQMREIERVIILRV HHHHHHCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VDTKWMDHIDDMDHLKQGIGLRAYKQQDPIQAYQMEGSAMFDEMINNIKIDTVRYLFHVK HHHHHHHHHCCHHHHHHCCCCEECCCCCCCHHHHCCCHHHHHHHHHCCCHHEEEEEEEEE VEAEKPQRERVAKETGASHGGDSQEIKKKPVKKEPKVGRNDLCPCGSGKKYKSCCGREVV EECCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA