| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311076
Identifier: 18311076
GI number: 18311076
Start: 2402578
End: 2403357
Strand: Direct
Name: 18311076
Synonym: CPE2094
Alternate gene names: NA
Gene position: 2402578-2403357 (Clockwise)
Preceding gene: 18311073
Following gene: 18311085
Centisome position: 79.26
GC content: 27.95
Gene sequence:
>780_bases ATGAAGAAAAATTTAATATTTTATTTTTCAACCTCAGGTAATTCACTTTACACGGCTAAGGAAATAGCTAAACATATAAA GGATGCAGAAATAATCTCCATAGTAGATGCTTTCTATAAAAAAGAGTTTAAATATGAAGCAGACACCATAGGCTTTGTAT ATCCTATTTATGCCTCTGGCCTTCCTCCTATGGTAAGTGAATTTATCTCTAAATTACAATTAAATAAGGATTCATATATT TTTGCAGCTGAGTGTACTGGTGGTGGAAAAGGCATAACCTTTTCCATGATAAATAAATTGCTTTATCCTAAGAACTTAAG TTTATCTAATGGGGAAAAGTTTTTACTTAACTCAAACTATATAAGAATGGGTAGAAATCCTAAGGTAGGAGAAGATGCAA AAAAAGTAATTGATTCAAACAAGTTTAAAATAGAAAATTTTACTCTCTCAATACTAAATAGGGAATCTAAAGACTTAAAG GAAAAACATACTAGAATTAATTTACTTTTATATAAACTTTGGAAAGATGGTTTTAAAAATAAAGATAAGAATTTTAACAC CAATGAATTTTGTACTGCTTGTGGAATTTGTGCTAAAATCTGTCCAAATAAAAATATAGAAATTGTAGATGAAGGCCCTA AATGGAAAGGAAATTGTTGTGATTGTATGGGATGTGTAAATAACTGTCCTCATAAGTGTATAAATATAGGAAATAAAACT AAAAAGAAGAATAGATATAAAAATCAATATATATTAACCTCTGAGCTTCTTAGAAAGTAA
Upstream 100 bases:
>100_bases TTATTTCGTATTAATTATATTTAGCCTTTATATAGAAATTATGTATTTTTAATATTAAAATGAATATAATGAATTATTTT TTAATAAGGATGGATATTAT
Downstream 100 bases:
>100_bases GAAATCCCTCTCTTAAGCTCATATTGATTTCTAGATAAGGCTAAGAAAATTTCTTAATAAAGAATAAAAAAGTTAAGTTA CTTCTAACTCTGTCTAGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: 4Fe-4S Ferredoxin; Iron-Sulfur Protein; Flavodoxin; Flavodoxin Domain Containing Protein; Polyferredoxin
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MKKNLIFYFSTSGNSLYTAKEIAKHIKDAEIISIVDAFYKKEFKYEADTIGFVYPIYASGLPPMVSEFISKLQLNKDSYI FAAECTGGGKGITFSMINKLLYPKNLSLSNGEKFLLNSNYIRMGRNPKVGEDAKKVIDSNKFKIENFTLSILNRESKDLK EKHTRINLLLYKLWKDGFKNKDKNFNTNEFCTACGICAKICPNKNIEIVDEGPKWKGNCCDCMGCVNNCPHKCINIGNKT KKKNRYKNQYILTSELLRK
Sequences:
>Translated_259_residues MKKNLIFYFSTSGNSLYTAKEIAKHIKDAEIISIVDAFYKKEFKYEADTIGFVYPIYASGLPPMVSEFISKLQLNKDSYI FAAECTGGGKGITFSMINKLLYPKNLSLSNGEKFLLNSNYIRMGRNPKVGEDAKKVIDSNKFKIENFTLSILNRESKDLK EKHTRINLLLYKLWKDGFKNKDKNFNTNEFCTACGICAKICPNKNIEIVDEGPKWKGNCCDCMGCVNNCPHKCINIGNKT KKKNRYKNQYILTSELLRK >Mature_259_residues MKKNLIFYFSTSGNSLYTAKEIAKHIKDAEIISIVDAFYKKEFKYEADTIGFVYPIYASGLPPMVSEFISKLQLNKDSYI FAAECTGGGKGITFSMINKLLYPKNLSLSNGEKFLLNSNYIRMGRNPKVGEDAKKVIDSNKFKIENFTLSILNRESKDLK EKHTRINLLLYKLWKDGFKNKDKNFNTNEFCTACGICAKICPNKNIEIVDEGPKWKGNCCDCMGCVNNCPHKCINIGNKT KKKNRYKNQYILTSELLRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29608; Mature: 29608
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS00198 4FE4S_FERREDOXIN ; PS50902 FLAVODOXIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 4.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNLIFYFSTSGNSLYTAKEIAKHIKDAEIISIVDAFYKKEFKYEADTIGFVYPIYASG CCCCEEEEEECCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCC LPPMVSEFISKLQLNKDSYIFAAECTGGGKGITFSMINKLLYPKNLSLSNGEKFLLNSNY CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCE IRMGRNPKVGEDAKKVIDSNKFKIENFTLSILNRESKDLKEKHTRINLLLYKLWKDGFKN EEECCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC KDKNFNTNEFCTACGICAKICPNKNIEIVDEGPKWKGNCCDCMGCVNNCPHKCINIGNKT CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHCCCCCH KKKNRYKNQYILTSELLRK HHHHHHCCCEEEHHHHHCC >Mature Secondary Structure MKKNLIFYFSTSGNSLYTAKEIAKHIKDAEIISIVDAFYKKEFKYEADTIGFVYPIYASG CCCCEEEEEECCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCC LPPMVSEFISKLQLNKDSYIFAAECTGGGKGITFSMINKLLYPKNLSLSNGEKFLLNSNY CCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCE IRMGRNPKVGEDAKKVIDSNKFKIENFTLSILNRESKDLKEKHTRINLLLYKLWKDGFKN EEECCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC KDKNFNTNEFCTACGICAKICPNKNIEIVDEGPKWKGNCCDCMGCVNNCPHKCINIGNKT CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHCCCCCH KKKNRYKNQYILTSELLRK HHHHHHCCCEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA