| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311060
Identifier: 18311060
GI number: 18311060
Start: 2382880
End: 2384328
Strand: Reverse
Name: 18311060
Synonym: CPE2078
Alternate gene names: NA
Gene position: 2384328-2382880 (Counterclockwise)
Preceding gene: 18311062
Following gene: 18311059
Centisome position: 78.65
GC content: 31.68
Gene sequence:
>1449_bases ATGTTAAAATTCAAGAAACTAATAGCTTTAACAGCTTGTGCAATGTTAACTACTTCCGTTGCATTAACTGGATGTGGAGC AGACAAAACAGCAAATGCTGGAGAGGGAGAAACAGTAAAACTTACTTGGTATACAATTGGACAAACACCAAAAGATTTAG ACATGGTTCAAGAAAAAGCTAATGAATATTTAAAAGAAAAGATCAATGCTACTATTGATATGAAATTTATTGATTACGGT GATTACACTCAAAAAATGGGAGTTATAATAAATTCAGGAGAACCATATGACTTAGCATTTACTTGTTCATGGGCTAACCC ATATTTAGAAAATGCTAGAAAAGGAGCTTTCTTAGAAATAGACGAATTATTAGAAACTAAAGGTAAAGAAATGAAGTCTG TTATAGATGAAAGATTCTGGGAAGGTGCTAAAATAGATGGTAAAACATATGCAGTTCCAAACCAAAAGGAAATAGGAGTT GCACCTATGTGGGTATTCACTAAGGAATATGTTGATAAATACAATATACCATATCAAGATATCCATACTTTAGAAGATTT AGAGCCATGGTTAAAGGTTATTCATGAAAATGAGCCAGATGTTACACCTTTATACATAACAAAAGGATTCTCAGCACCAG CTTACTTCGATCAATTAGTTGATCCAGTAGGAGTTGAGTATGGAGATGAAAGCTTAAAGATTAAAAATATGTTTGAAACA GATAAAATGAAGGGTGAATTAGAAACTTTACAAAAGTACTATGATGCTGGATATATAAATGCTGACTCAGCTACAGCTAA GGATGATAAAGCAGTTAAGAGATTTGTAACTAAAGCTGATGGACAACCTTATGCTGATGGATTATGGTCAAAGGATTTAG GATATGAGGTAGTTTCATCACCAATAATGGAAACTCATATTACTAATGGTTCAACTACAGGATCAATGATAGCTATTTCT AAAACTTCAGAGCATCCAGAAAAAGCTATGGAATTCTTAAACTTATTAAACACTGACGTATATTTAAGAAACTTACTTAA CTATGGTATAGAAGATGTTCACTATGAAAAAACTGGTGATACTCAAATAAAATTAACTGATAAAGCTAAAGACTACTCAG TTGGATACTATACTTTAGGTAACTTATTCATAACTTATACTTTAGATAACGAACCAGTTGATAAATGGAAAGAATTCGAA GCATTTAATGATGCATCAGTTGAATCACCTGCTTTAGGATTCAAATTTAACACTGAAAAAGTAAGTAACCAAATAGCTGC TATAAACAACGTTCTTGAAGAGTTCAAGGCAACTATATACAGTGGATCAGTTAACGAAGCTGAATATTTAGATAAAATGA ACAAGAAATTAAAAGAAGTTGGAATAGATGAAGTAATTTCAGAAATGCAAAGTCAAATAGATGCATGGAAAGCTGAAAAT GGAAAATAA
Upstream 100 bases:
>100_bases AAAAACTCCACTATGAAAATGTTTAGATGGGCTATATAATAAATCTGTAAACGATATTAAGGGATTTGAAAAACAAAGGT TTAATAGGGAGGAAAACGTA
Downstream 100 bases:
>100_bases TATAATTTTAAAATAAGTGTAAACTCTATGCCAAGCATAGAGTTTACTTTTATAAAAATATAAATAAAACTTATGAAAGT ATTCTTACATAATCTAAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 482; Mature: 482
Protein sequence:
>482_residues MLKFKKLIALTACAMLTTSVALTGCGADKTANAGEGETVKLTWYTIGQTPKDLDMVQEKANEYLKEKINATIDMKFIDYG DYTQKMGVIINSGEPYDLAFTCSWANPYLENARKGAFLEIDELLETKGKEMKSVIDERFWEGAKIDGKTYAVPNQKEIGV APMWVFTKEYVDKYNIPYQDIHTLEDLEPWLKVIHENEPDVTPLYITKGFSAPAYFDQLVDPVGVEYGDESLKIKNMFET DKMKGELETLQKYYDAGYINADSATAKDDKAVKRFVTKADGQPYADGLWSKDLGYEVVSSPIMETHITNGSTTGSMIAIS KTSEHPEKAMEFLNLLNTDVYLRNLLNYGIEDVHYEKTGDTQIKLTDKAKDYSVGYYTLGNLFITYTLDNEPVDKWKEFE AFNDASVESPALGFKFNTEKVSNQIAAINNVLEEFKATIYSGSVNEAEYLDKMNKKLKEVGIDEVISEMQSQIDAWKAEN GK
Sequences:
>Translated_482_residues MLKFKKLIALTACAMLTTSVALTGCGADKTANAGEGETVKLTWYTIGQTPKDLDMVQEKANEYLKEKINATIDMKFIDYG DYTQKMGVIINSGEPYDLAFTCSWANPYLENARKGAFLEIDELLETKGKEMKSVIDERFWEGAKIDGKTYAVPNQKEIGV APMWVFTKEYVDKYNIPYQDIHTLEDLEPWLKVIHENEPDVTPLYITKGFSAPAYFDQLVDPVGVEYGDESLKIKNMFET DKMKGELETLQKYYDAGYINADSATAKDDKAVKRFVTKADGQPYADGLWSKDLGYEVVSSPIMETHITNGSTTGSMIAIS KTSEHPEKAMEFLNLLNTDVYLRNLLNYGIEDVHYEKTGDTQIKLTDKAKDYSVGYYTLGNLFITYTLDNEPVDKWKEFE AFNDASVESPALGFKFNTEKVSNQIAAINNVLEEFKATIYSGSVNEAEYLDKMNKKLKEVGIDEVISEMQSQIDAWKAEN GK >Mature_482_residues MLKFKKLIALTACAMLTTSVALTGCGADKTANAGEGETVKLTWYTIGQTPKDLDMVQEKANEYLKEKINATIDMKFIDYG DYTQKMGVIINSGEPYDLAFTCSWANPYLENARKGAFLEIDELLETKGKEMKSVIDERFWEGAKIDGKTYAVPNQKEIGV APMWVFTKEYVDKYNIPYQDIHTLEDLEPWLKVIHENEPDVTPLYITKGFSAPAYFDQLVDPVGVEYGDESLKIKNMFET DKMKGELETLQKYYDAGYINADSATAKDDKAVKRFVTKADGQPYADGLWSKDLGYEVVSSPIMETHITNGSTTGSMIAIS KTSEHPEKAMEFLNLLNTDVYLRNLLNYGIEDVHYEKTGDTQIKLTDKAKDYSVGYYTLGNLFITYTLDNEPVDKWKEFE AFNDASVESPALGFKFNTEKVSNQIAAINNVLEEFKATIYSGSVNEAEYLDKMNKKLKEVGIDEVISEMQSQIDAWKAEN GK
Specific function: Unknown
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54347; Mature: 54347
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKFKKLIALTACAMLTTSVALTGCGADKTANAGEGETVKLTWYTIGQTPKDLDMVQEKA CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHH NEYLKEKINATIDMKFIDYGDYTQKMGVIINSGEPYDLAFTCSWANPYLENARKGAFLEI HHHHHHHHCCEEEEEEEECCCCHHCCCEEEECCCCEEEEEEECCCCHHHHHCCCCCEEEH DELLETKGKEMKSVIDERFWEGAKIDGKTYAVPNQKEIGVAPMWVFTKEYVDKYNIPYQD HHHHHHCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHH IHTLEDLEPWLKVIHENEPDVTPLYITKGFSAPAYFDQLVDPVGVEYGDESLKIKNMFET HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHH DKMKGELETLQKYYDAGYINADSATAKDDKAVKRFVTKADGQPYADGLWSKDLGYEVVSS HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHC PIMETHITNGSTTGSMIAISKTSEHPEKAMEFLNLLNTDVYLRNLLNYGIEDVHYEKTGD CHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC TQIKLTDKAKDYSVGYYTLGNLFITYTLDNEPVDKWKEFEAFNDASVESPALGFKFNTEK CEEEEECCCCCCCCCEEEECCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECHHH VSNQIAAINNVLEEFKATIYSGSVNEAEYLDKMNKKLKEVGIDEVISEMQSQIDAWKAEN HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC GK CC >Mature Secondary Structure MLKFKKLIALTACAMLTTSVALTGCGADKTANAGEGETVKLTWYTIGQTPKDLDMVQEKA CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHH NEYLKEKINATIDMKFIDYGDYTQKMGVIINSGEPYDLAFTCSWANPYLENARKGAFLEI HHHHHHHHCCEEEEEEEECCCCHHCCCEEEECCCCEEEEEEECCCCHHHHHCCCCCEEEH DELLETKGKEMKSVIDERFWEGAKIDGKTYAVPNQKEIGVAPMWVFTKEYVDKYNIPYQD HHHHHHCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHH IHTLEDLEPWLKVIHENEPDVTPLYITKGFSAPAYFDQLVDPVGVEYGDESLKIKNMFET HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHH DKMKGELETLQKYYDAGYINADSATAKDDKAVKRFVTKADGQPYADGLWSKDLGYEVVSS HHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHC PIMETHITNGSTTGSMIAISKTSEHPEKAMEFLNLLNTDVYLRNLLNYGIEDVHYEKTGD CHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC TQIKLTDKAKDYSVGYYTLGNLFITYTLDNEPVDKWKEFEAFNDASVESPALGFKFNTEK CEEEEECCCCCCCCCEEEECCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECHHH VSNQIAAINNVLEEFKATIYSGSVNEAEYLDKMNKKLKEVGIDEVISEMQSQIDAWKAEN HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC GK CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA