Click here to switch to the map view.

The map label for this gene is ycaM [H]

Identifier: 18311057

GI number: 18311057

Start: 2377731

End: 2379209

Strand: Reverse

Name: ycaM [H]

Synonym: CPE2075

Alternate gene names: 18311057

Gene position: 2379209-2377731 (Counterclockwise)

Preceding gene: 18311058

Following gene: 18311056

Centisome position: 78.48

GC content: 32.25

Gene sequence:

>1479_bases
ATGGGTAATAGTAATGACGGAAAAAAACTTATGTGGTATAACCTTGGTTTAATGGCCTTTGTATCAGTTTGGGGCTTTGG
TAACGTAGTAAACAACTTCGCAACTCAAGGGTTAACCGTAGTAACTTCATGGATATTAATAATAGCTTTATATTTCGTAC
CATATGCACTTATGGTTGGAGAATTAGGCTCAACTTTTAGAGATAGTAAAGGTGGAGTAAGTTCATGGATAGGTAAAACA
ATGGGACCTACATTAGCTTACTTAGCAGGTTGGACTTATTGGGTGGTACATGTGCCTTATTTAGCGCAAAAACCACAAGC
AGTACTTGTTTCATTAGGATGGGCAGTATTCCAAGATGGAAGCACTATAAAAGGTATAGATTCTAAAATTATTCAATTAG
TATGTTTAGTAGTATTTTTATTCTTTGTATGGATTGCTTCAAGAGGAGTAAATTCATTAGGGAAAATAGGTACAATAGCA
GGAACAGCAATGTTTGTTATGTCTATTCTTTATATAATACTTATGTTAACAGCACCTGCTATTACAGGAACTTCTATAGC
AAGTCCAAATATGACTTCTATAAAAACCTATATACCGAAATTTGATTTTGCCTATTTTACCACTATAGCTATGTTAGTAT
TCTCAGTTGGAGGAGCTGAAAAGATATCTCCATATGTTAACAACATGAAAGATTCTAAAAAAGGTTTCTCAAAAGGTATG
ATAGCCTTAGCTATAATGGTTGCAGTTACAGCACTTCTTGGATCAGTAGCAATGGGAATGATGTTTGATGCAAATAATGT
TCCTGATGACTTAATGTTAAATGGTGCTTACTATGCATTCCAAAAGTTGGGTAATTATTATGGAATAGGAAATTCTTTAT
TAATATTATATGCATTAGCAAACTTTGCAGCTCAAGTTTCAGCATTAGTATTCTCAATAGATGCTCCATTAAAAGTTTTA
TTATCAGATACTGATGCAAGATATGTTCCAATAGCATTAACTAAGACTAATAAGAATGGGGCTCCAATAAATGGATATAT
AATGACTTCTATTTTAGTTGGAATATTAATAATAGTTCCAGCTTTAGGAATTGGAAACTTCAATGCTTTATTTACTTGGT
TATTAAAATTAAATGCTGTTGTTATGCCAATGAGATATTTATGGGTATTCTTAGCTTACATAATGTTAAGAAAAGCTATA
AAAGGAAAGTTCAAATCAGAGTACAAATTTGTTAAAAATGATAAATTCGCAATGTTAATAGGTACTTGGTGTTTTGTATT
TACAGCATTTGCTTGTATATTAGGTATGTTCCCAACAGATGTTCAAGCATTCTCCGGAGAATGGATTTTCAGAGTAGGAA
TGAATATTGGTACACCTTTAGTATTAATAGGATTAGGGTTAATATTACCTAAGATAGCTAAGAGAACTAACGGACAAGCA
TATGATGATGCAGTAAGAGAAGCTACAGCAAAAAAATAA

Upstream 100 bases:

>100_bases
TATGACAAGTTTTCTATGAATTCTTTTAAAAATAGACAAGTATTTTTAAGAAAATTTATATGAAAGCTACTAAAATTTAA
TGATTAGGAGGGAAAAGTAC

Downstream 100 bases:

>100_bases
AAGTTAAATATAAAAGGCACTCTATAGAGTGTCTTTTTTTTATACAATTATATAATTATATTTGGTGATTTTATTAGATT
AATTATAATGACAAAATATA

Product: amino acid permease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MGNSNDGKKLMWYNLGLMAFVSVWGFGNVVNNFATQGLTVVTSWILIIALYFVPYALMVGELGSTFRDSKGGVSSWIGKT
MGPTLAYLAGWTYWVVHVPYLAQKPQAVLVSLGWAVFQDGSTIKGIDSKIIQLVCLVVFLFFVWIASRGVNSLGKIGTIA
GTAMFVMSILYIILMLTAPAITGTSIASPNMTSIKTYIPKFDFAYFTTIAMLVFSVGGAEKISPYVNNMKDSKKGFSKGM
IALAIMVAVTALLGSVAMGMMFDANNVPDDLMLNGAYYAFQKLGNYYGIGNSLLILYALANFAAQVSALVFSIDAPLKVL
LSDTDARYVPIALTKTNKNGAPINGYIMTSILVGILIIVPALGIGNFNALFTWLLKLNAVVMPMRYLWVFLAYIMLRKAI
KGKFKSEYKFVKNDKFAMLIGTWCFVFTAFACILGMFPTDVQAFSGEWIFRVGMNIGTPLVLIGLGLILPKIAKRTNGQA
YDDAVREATAKK

Sequences:

>Translated_492_residues
MGNSNDGKKLMWYNLGLMAFVSVWGFGNVVNNFATQGLTVVTSWILIIALYFVPYALMVGELGSTFRDSKGGVSSWIGKT
MGPTLAYLAGWTYWVVHVPYLAQKPQAVLVSLGWAVFQDGSTIKGIDSKIIQLVCLVVFLFFVWIASRGVNSLGKIGTIA
GTAMFVMSILYIILMLTAPAITGTSIASPNMTSIKTYIPKFDFAYFTTIAMLVFSVGGAEKISPYVNNMKDSKKGFSKGM
IALAIMVAVTALLGSVAMGMMFDANNVPDDLMLNGAYYAFQKLGNYYGIGNSLLILYALANFAAQVSALVFSIDAPLKVL
LSDTDARYVPIALTKTNKNGAPINGYIMTSILVGILIIVPALGIGNFNALFTWLLKLNAVVMPMRYLWVFLAYIMLRKAI
KGKFKSEYKFVKNDKFAMLIGTWCFVFTAFACILGMFPTDVQAFSGEWIFRVGMNIGTPLVLIGLGLILPKIAKRTNGQA
YDDAVREATAKK
>Mature_491_residues
GNSNDGKKLMWYNLGLMAFVSVWGFGNVVNNFATQGLTVVTSWILIIALYFVPYALMVGELGSTFRDSKGGVSSWIGKTM
GPTLAYLAGWTYWVVHVPYLAQKPQAVLVSLGWAVFQDGSTIKGIDSKIIQLVCLVVFLFFVWIASRGVNSLGKIGTIAG
TAMFVMSILYIILMLTAPAITGTSIASPNMTSIKTYIPKFDFAYFTTIAMLVFSVGGAEKISPYVNNMKDSKKGFSKGMI
ALAIMVAVTALLGSVAMGMMFDANNVPDDLMLNGAYYAFQKLGNYYGIGNSLLILYALANFAAQVSALVFSIDAPLKVLL
SDTDARYVPIALTKTNKNGAPINGYIMTSILVGILIIVPALGIGNFNALFTWLLKLNAVVMPMRYLWVFLAYIMLRKAIK
GKFKSEYKFVKNDKFAMLIGTWCFVFTAFACILGMFPTDVQAFSGEWIFRVGMNIGTPLVLIGLGLILPKIAKRTNGQAY
DDAVREATAKK

Specific function: Unknown

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081798, Length=478, Percent_Identity=60.6694560669456, Blast_Score=618, Evalue=1e-178,
Organism=Escherichia coli, GI48994921, Length=488, Percent_Identity=22.9508196721311, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI87082380, Length=465, Percent_Identity=22.5806451612903, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1787768, Length=381, Percent_Identity=25.1968503937008, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 53638; Mature: 53506

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCC
>Mature Secondary Structure 
GNSNDGKKLMWYNLGLMAFVSVWGFGNVVNNFATQGLTVVTSWILIIALYFVPYALMVG
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]