| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is spoVAD [H]
Identifier: 18311028
GI number: 18311028
Start: 2337684
End: 2338703
Strand: Reverse
Name: spoVAD [H]
Synonym: CPE2046
Alternate gene names: 18311028
Gene position: 2338703-2337684 (Counterclockwise)
Preceding gene: 18311029
Following gene: 18311027
Centisome position: 77.15
GC content: 33.14
Gene sequence:
>1020_bases ATGAGTAATAATACAAAAAGAGTAGGATCTCAAACAATAGAATTAAAAAGTAAACCTAGAATAATAGCTACATATAGTGT GGTTGGTCCTAGAGAAGGTCAGGGGCCTTTAAAAGAATATTTTGATAAAATACTACAAGATGACTGTAATGGCTGTGAAA GCTTTGAAAAGGCTGAAAGTAGTTTAATGATAACTGCTATAGAGGGAGTAATTAAAAAAGGTAATGTAAAAGAAGAGGAC GTAGATTATCTTTTTAGTGGTGATTTATTAAATCAGTTAACATCAACAAATTTTGTTGCTAGAGAATTTAAAATTCCTTT TTTTGGAGTGTATGGAGCTTGTTCTACTATGGCTGAATCATTAAGTTTATCATCAATGATTATGGATGGTGATTTTGCAA AGTATGCAATTGCTTCTACATCCTCTCACTTTAGTTCAGCAGAAAGACAATTTAGATTTCCTTTAGAATATGGATGTCAA AGAAAAGAATATTCACAGTGGACTGTAACTGGTTCTGGAGCTATGCTTTTAGGAAAGTCAGGAGATTATCCTTATGTTAC CCATGTAACCACAGGAATTGTTAAGGATTATGGAATTAAGGATGCAGATAATATGGGAGCTGCTATGGCACCAGCTGCTG TAGATACTATATATAAGCATTTTGTTGATACAGGAAGAAAACCTGAAGATTATGATGTAATAGCAACTGGAGACTTAGGG GCTGTAGGAAAGAAATTAACAGAGGAATTATTAAAAGAGTATGGATATGATATTAGTAAGGTTTATATAGATTGTGGAGA AAAGATATTTGATAATGAAAAACAAGGAACTTTTGCAGGCGGAAGTGGATGTGGATGCTCAGCCGTTGTAGCCTGTGGAT ATTTATATAGAATGTTAAAAGAGAAAAAGTTAAAAAGAGTTTTATTAGTTTCCACAGGAGCTTTATTAAGTTCTACATCT GCCTTACAAGGAGAAAGCATACCAGGAATAGCTCATGCTGTAGCTATAGAATATATTTAA
Upstream 100 bases:
>100_bases CTATTGCAGGTCCTGTTTTAGTTTATGGTACAGGAACCTCTGTAATAGTTGGACTAATATATTACTTATTACTTAGAGTT GGAATTGTGGGGTGATAAGA
Downstream 100 bases:
>100_bases ACTAAGTTAGATATTTTGTGTGAATATTTTGTTATAAAAATTTAATAATGAGGAGATGAGAATTTTGCAAGATTACATAA ATGCTTTTTTAGTAGGTGGT
Product: stage V sporulation protein AD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MSNNTKRVGSQTIELKSKPRIIATYSVVGPREGQGPLKEYFDKILQDDCNGCESFEKAESSLMITAIEGVIKKGNVKEED VDYLFSGDLLNQLTSTNFVAREFKIPFFGVYGACSTMAESLSLSSMIMDGDFAKYAIASTSSHFSSAERQFRFPLEYGCQ RKEYSQWTVTGSGAMLLGKSGDYPYVTHVTTGIVKDYGIKDADNMGAAMAPAAVDTIYKHFVDTGRKPEDYDVIATGDLG AVGKKLTEELLKEYGYDISKVYIDCGEKIFDNEKQGTFAGGSGCGCSAVVACGYLYRMLKEKKLKRVLLVSTGALLSSTS ALQGESIPGIAHAVAIEYI
Sequences:
>Translated_339_residues MSNNTKRVGSQTIELKSKPRIIATYSVVGPREGQGPLKEYFDKILQDDCNGCESFEKAESSLMITAIEGVIKKGNVKEED VDYLFSGDLLNQLTSTNFVAREFKIPFFGVYGACSTMAESLSLSSMIMDGDFAKYAIASTSSHFSSAERQFRFPLEYGCQ RKEYSQWTVTGSGAMLLGKSGDYPYVTHVTTGIVKDYGIKDADNMGAAMAPAAVDTIYKHFVDTGRKPEDYDVIATGDLG AVGKKLTEELLKEYGYDISKVYIDCGEKIFDNEKQGTFAGGSGCGCSAVVACGYLYRMLKEKKLKRVLLVSTGALLSSTS ALQGESIPGIAHAVAIEYI >Mature_338_residues SNNTKRVGSQTIELKSKPRIIATYSVVGPREGQGPLKEYFDKILQDDCNGCESFEKAESSLMITAIEGVIKKGNVKEEDV DYLFSGDLLNQLTSTNFVAREFKIPFFGVYGACSTMAESLSLSSMIMDGDFAKYAIASTSSHFSSAERQFRFPLEYGCQR KEYSQWTVTGSGAMLLGKSGDYPYVTHVTTGIVKDYGIKDADNMGAAMAPAAVDTIYKHFVDTGRKPEDYDVIATGDLGA VGKKLTEELLKEYGYDISKVYIDCGEKIFDNEKQGTFAGGSGCGCSAVVACGYLYRMLKEKKLKRVLLVSTGALLSSTSA LQGESIPGIAHAVAIEYI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010894 - InterPro: IPR016039 - InterPro: IPR016038 [H]
Pfam domain/function: PF07451 SpoVAD [H]
EC number: NA
Molecular weight: Translated: 36870; Mature: 36739
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNNTKRVGSQTIELKSKPRIIATYSVVGPREGQGPLKEYFDKILQDDCNGCESFEKAES CCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH SLMITAIEGVIKKGNVKEEDVDYLFSGDLLNQLTSTNFVAREFKIPFFGVYGACSTMAES CEEEHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCHHHHEECCCEEEHHHHHHHHHHH LSLSSMIMDGDFAKYAIASTSSHFSSAERQFRFPLEYGCQRKEYSQWTVTGSGAMLLGKS HHHHHHHCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHCCCCCCCCEEEEECCCEEEEECC GDYPYVTHVTTGIVKDYGIKDADNMGAAMAPAAVDTIYKHFVDTGRKPEDYDVIATGDLG CCCCEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHH AVGKKLTEELLKEYGYDISKVYIDCGEKIFDNEKQGTFAGGSGCGCSAVVACGYLYRMLK HHHHHHHHHHHHHHCCCCEEHHHHHCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH EKKLKRVLLVSTGALLSSTSALQGESIPGIAHAVAIEYI HHHHHEEEEEECCHHHHCCCCCCCCCCCCHHHHHEEECC >Mature Secondary Structure SNNTKRVGSQTIELKSKPRIIATYSVVGPREGQGPLKEYFDKILQDDCNGCESFEKAES CCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH SLMITAIEGVIKKGNVKEEDVDYLFSGDLLNQLTSTNFVAREFKIPFFGVYGACSTMAES CEEEHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCHHHHEECCCEEEHHHHHHHHHHH LSLSSMIMDGDFAKYAIASTSSHFSSAERQFRFPLEYGCQRKEYSQWTVTGSGAMLLGKS HHHHHHHCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHCCCCCCCCEEEEECCCEEEEECC GDYPYVTHVTTGIVKDYGIKDADNMGAAMAPAAVDTIYKHFVDTGRKPEDYDVIATGDLG CCCCEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHH AVGKKLTEELLKEYGYDISKVYIDCGEKIFDNEKQGTFAGGSGCGCSAVVACGYLYRMLK HHHHHHHHHHHHHHCCCCEEHHHHHCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH EKKLKRVLLVSTGALLSSTSALQGESIPGIAHAVAIEYI HHHHHEEEEEECCHHHHCCCCCCCCCCCCHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3926949; 8969508; 9384377 [H]