| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311011
Identifier: 18311011
GI number: 18311011
Start: 2319602
End: 2320780
Strand: Reverse
Name: 18311011
Synonym: CPE2029
Alternate gene names: NA
Gene position: 2320780-2319602 (Counterclockwise)
Preceding gene: 18311012
Following gene: 18311010
Centisome position: 76.56
GC content: 25.19
Gene sequence:
>1179_bases ATGAAAAAAAGAGTACCTTTGGTGTTAACAATAATATTTTTAAGTGCATTTATAATTTTTTCTGGAATATTTATTTACAT TAATTGTTCGCCAATGAAGTTTAAAGATATATATGGAAGTAGAAGTGAACTTGGAGATGTTGATTTAGTTTTTTATAAAG ATAGAGATATTTTTGAAGAAGAAGTAACTGTTGGAGCTGAAACAATTAATAGAAAAAATATTATTAATGAGAGACGTTTT GATGGTATTGACGTACTTAAAGATAAGAAGTTTTTTAGAGGAATTTATCCAACAAGAAATACTTTCTTTGAGGATGACGA TGTAATGGTTGATGTTACTAATATATACGGTAATGGTATTCAAAAGCTTGAAGTTAGATTTAAGGATAAAAAAACTAACA CTTATGAAACTTTTAAGGTTAAAGTAGATGAATATATTAGAAATAATAATATAGATAAAGTCACTTATAAAGATGGAAAA ATAAATATATTATTTTCAATGAATTACGAGGAAAATAATATAGTATTTGGGGAAATAAATTTATCTGATAAAAAATTTAA TATAGTTGATATAATAAATTTAGATGAAGAATTGCATTTAAATGAAGAATTTTCTCATATAAATTCAATACCTCAAGAGT TTGGAACTTTATTAAATGCTGAAGAAGATACAGTATATTATAAATTAAACGAACTTGATAAGACCGATAAGAGGGGAATA TATAGTGATGAGAGTATTATTGAATTAAATGTAAATACTAGAGAAATAAAAAGATATAATCCTGATGATAAAATAAGAAA TGAAATAAAGGAATCTTCCTTTGATCCAAATGGAAAAGGTGGTACAATGTTTGAGGCTTATGGTGAAATATATATTACCC AGACCTCAGATGAGAAGACTTCAGTATTAGTGTTTGACACTAAAACAAAAGAGTTTAAATTTTATAAAGATATTGTAGAA AATGAAAGATTAAAGAGATATGGGGTAGAAGTTAGAGATTTAGGTAAATTTATAATTGTAGGAAATAAAGTTATAGCTAA TTTTGTTAATGTTAGAGATGATGGTTTTGTAAGTGGAGCTTATTTATCAGTTATAGATATACCTAGTAAAAATCCAGTTT ATATAGGTGAGTTAGAATGTGGATATTTAAGTGACATTAAGATAACAGGAGGTAAATAA
Upstream 100 bases:
>100_bases TTGGTTTGTTTTCATATCAATCTTATATAATTTGTTCGGATTGTTTTATTCTAAGTATTTACTTGAAAAAAAGGTTCATG TGTAAGGAGGATTAGAAATT
Downstream 100 bases:
>100_bases AATGTTTTTTGAAGTAAACGATAGAGAACCAATTTATCTCCAAATAATAAGACATATAAAACAATCTTTAGTTATTGGGA GTTTAAAGCCTGGGGATCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MKKRVPLVLTIIFLSAFIIFSGIFIYINCSPMKFKDIYGSRSELGDVDLVFYKDRDIFEEEVTVGAETINRKNIINERRF DGIDVLKDKKFFRGIYPTRNTFFEDDDVMVDVTNIYGNGIQKLEVRFKDKKTNTYETFKVKVDEYIRNNNIDKVTYKDGK INILFSMNYEENNIVFGEINLSDKKFNIVDIINLDEELHLNEEFSHINSIPQEFGTLLNAEEDTVYYKLNELDKTDKRGI YSDESIIELNVNTREIKRYNPDDKIRNEIKESSFDPNGKGGTMFEAYGEIYITQTSDEKTSVLVFDTKTKEFKFYKDIVE NERLKRYGVEVRDLGKFIIVGNKVIANFVNVRDDGFVSGAYLSVIDIPSKNPVYIGELECGYLSDIKITGGK
Sequences:
>Translated_392_residues MKKRVPLVLTIIFLSAFIIFSGIFIYINCSPMKFKDIYGSRSELGDVDLVFYKDRDIFEEEVTVGAETINRKNIINERRF DGIDVLKDKKFFRGIYPTRNTFFEDDDVMVDVTNIYGNGIQKLEVRFKDKKTNTYETFKVKVDEYIRNNNIDKVTYKDGK INILFSMNYEENNIVFGEINLSDKKFNIVDIINLDEELHLNEEFSHINSIPQEFGTLLNAEEDTVYYKLNELDKTDKRGI YSDESIIELNVNTREIKRYNPDDKIRNEIKESSFDPNGKGGTMFEAYGEIYITQTSDEKTSVLVFDTKTKEFKFYKDIVE NERLKRYGVEVRDLGKFIIVGNKVIANFVNVRDDGFVSGAYLSVIDIPSKNPVYIGELECGYLSDIKITGGK >Mature_392_residues MKKRVPLVLTIIFLSAFIIFSGIFIYINCSPMKFKDIYGSRSELGDVDLVFYKDRDIFEEEVTVGAETINRKNIINERRF DGIDVLKDKKFFRGIYPTRNTFFEDDDVMVDVTNIYGNGIQKLEVRFKDKKTNTYETFKVKVDEYIRNNNIDKVTYKDGK INILFSMNYEENNIVFGEINLSDKKFNIVDIINLDEELHLNEEFSHINSIPQEFGTLLNAEEDTVYYKLNELDKTDKRGI YSDESIIELNVNTREIKRYNPDDKIRNEIKESSFDPNGKGGTMFEAYGEIYITQTSDEKTSVLVFDTKTKEFKFYKDIVE NERLKRYGVEVRDLGKFIIVGNKVIANFVNVRDDGFVSGAYLSVIDIPSKNPVYIGELECGYLSDIKITGGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45505; Mature: 45505
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKRVPLVLTIIFLSAFIIFSGIFIYINCSPMKFKDIYGSRSELGDVDLVFYKDRDIFEE CCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEHHHCCCCCCCCCEEEEEECCCCCCHH EVTVGAETINRKNIINERRFDGIDVLKDKKFFRGIYPTRNTFFEDDDVMVDVTNIYGNGI HHHHCHHHCCHHHCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCCCEEEEEEECCCCCE QKLEVRFKDKKTNTYETFKVKVDEYIRNNNIDKVTYKDGKINILFSMNYEENNIVFGEIN EEEEEEEECCCCCCEEEEEEEEHHHHHCCCCCEEEECCCEEEEEEEECCCCCCEEEEEEE LSDKKFNIVDIINLDEELHLNEEFSHINSIPQEFGTLLNAEEDTVYYKLNELDKTDKRGI CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC YSDESIIELNVNTREIKRYNPDDKIRNEIKESSFDPNGKGGTMFEAYGEIYITQTSDEKT CCCCCEEEEECCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEEEECCCCCE SVLVFDTKTKEFKFYKDIVENERLKRYGVEVRDLGKFIIVGNKVIANFVNVRDDGFVSGA EEEEEECCCCHHHHHHHHHCCCHHHHHCCCHHHCCCEEEECCHHHHHHHCCCCCCEECCE YLSVIDIPSKNPVYIGELECGYLSDIKITGGK EEEEEECCCCCCEEEEEECCCEEEEEEEECCC >Mature Secondary Structure MKKRVPLVLTIIFLSAFIIFSGIFIYINCSPMKFKDIYGSRSELGDVDLVFYKDRDIFEE CCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEHHHCCCCCCCCCEEEEEECCCCCCHH EVTVGAETINRKNIINERRFDGIDVLKDKKFFRGIYPTRNTFFEDDDVMVDVTNIYGNGI HHHHCHHHCCHHHCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCCCCEEEEEEECCCCCE QKLEVRFKDKKTNTYETFKVKVDEYIRNNNIDKVTYKDGKINILFSMNYEENNIVFGEIN EEEEEEEECCCCCCEEEEEEEEHHHHHCCCCCEEEECCCEEEEEEEECCCCCCEEEEEEE LSDKKFNIVDIINLDEELHLNEEFSHINSIPQEFGTLLNAEEDTVYYKLNELDKTDKRGI CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC YSDESIIELNVNTREIKRYNPDDKIRNEIKESSFDPNGKGGTMFEAYGEIYITQTSDEKT CCCCCEEEEECCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECEEEEEECCCCCE SVLVFDTKTKEFKFYKDIVENERLKRYGVEVRDLGKFIIVGNKVIANFVNVRDDGFVSGA EEEEEECCCCHHHHHHHHHCCCHHHHHCCCHHHCCCEEEECCHHHHHHHCCCCCCEECCE YLSVIDIPSKNPVYIGELECGYLSDIKITGGK EEEEEECCCCCCEEEEEECCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA