| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310980
Identifier: 18310980
GI number: 18310980
Start: 2289285
End: 2290334
Strand: Reverse
Name: 18310980
Synonym: CPE1998
Alternate gene names: NA
Gene position: 2290334-2289285 (Counterclockwise)
Preceding gene: 18310981
Following gene: 18310977
Centisome position: 75.55
GC content: 25.24
Gene sequence:
>1050_bases ATGGATAAATTAAAGCAATTTTTAAAGTGGGGACTATTGTCTGTAATTTTACAATGCTTAGTTTTATTTGTTTTTGATAA ATTTTATTTTAAGTTAAATTCTGATGTAAATGTAAAAGCTATAGATATAGCTAGCCAACATACAAAAGAGAATAATGATG TAAAATTACCAGGGAATATGATGGATAAAAAGATATCTTATGATGGAGAATATATAGCATATTTAAACAATAATGATGAA CTTAAAGTCTTTAATACTCTTAAAGATGATGAAAGTCATGTTGATATAGAAAATGAAAAAGCATCTTATTATACTTGGCT TAGAGATAGAAATAGACTTATTGTAATTACGAATATTAAATATAATAATAAAAAGAATACAGTTAATTTATATTCTATTG ATGTAGATACCAATAAAACTAAGAAAATTGAGCTTGGTAATATGAATTCTTCTTATAAAGTTAATGAGATAACAGTTTCA ACTAAAACAGGAGTTATATACATTGAATTTAAGAATGAAGATACAAAAGAGTCTATAGTTAAGAGAATAGATAATAATGA TGATATAACTGATGTAAGACTAGTAACTGATTCACCAGGAAATATTGAAGTAATGCCAAGGGCAGATAGATTAGTATATG ACAGTGAAAAAGAATCAGGAATATATCTTACACAGCCAAATAAGAAATTAGGAATTAATCCAATATATAAAGTGAGACTT TTAGGTGTTGATGAAACTGGAAATATATACTTTGGAGAAATAAAAGACAATAAAGTATTTAAAATAGTTTATGGAAATGT AGAAAAGTCAATTGATACTTGGAATAAAATACCTCTAGAAAAAAGCTTAGAGCTAAATAAGATCTATATAGGAAAAGATG GAGAAATATACGTTTTAGAAGAAGAACAAAAGATTGTTAAAGATGTTAAAAATGGAAAAGAGTACAAATATGAAGGCGAC TTCTTACAAATGTATTCTAATGGATTTGCAACAATTATAAATGGAAATAAACTTCATAGAGTATATTTTGATTCATCTCA AAATGCTTAG
Upstream 100 bases:
>100_bases ATGTACTTAAATGGGAAAGTAATAAATAATCCAGCATCAAATGTAGGGGAGAGATCTATTCCTTCAGCTATAATAGTAAA ATAACAAAGAGGAGAATTTT
Downstream 100 bases:
>100_bases TGGAAATATTATATGGAATCTAAAATGAATTTAAAATAATTTATATAAAAAAGGCAAAGAATAATTTACATTAAAATAAG TTATTCTTTGCCTTTTACTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MDKLKQFLKWGLLSVILQCLVLFVFDKFYFKLNSDVNVKAIDIASQHTKENNDVKLPGNMMDKKISYDGEYIAYLNNNDE LKVFNTLKDDESHVDIENEKASYYTWLRDRNRLIVITNIKYNNKKNTVNLYSIDVDTNKTKKIELGNMNSSYKVNEITVS TKTGVIYIEFKNEDTKESIVKRIDNNDDITDVRLVTDSPGNIEVMPRADRLVYDSEKESGIYLTQPNKKLGINPIYKVRL LGVDETGNIYFGEIKDNKVFKIVYGNVEKSIDTWNKIPLEKSLELNKIYIGKDGEIYVLEEEQKIVKDVKNGKEYKYEGD FLQMYSNGFATIINGNKLHRVYFDSSQNA
Sequences:
>Translated_349_residues MDKLKQFLKWGLLSVILQCLVLFVFDKFYFKLNSDVNVKAIDIASQHTKENNDVKLPGNMMDKKISYDGEYIAYLNNNDE LKVFNTLKDDESHVDIENEKASYYTWLRDRNRLIVITNIKYNNKKNTVNLYSIDVDTNKTKKIELGNMNSSYKVNEITVS TKTGVIYIEFKNEDTKESIVKRIDNNDDITDVRLVTDSPGNIEVMPRADRLVYDSEKESGIYLTQPNKKLGINPIYKVRL LGVDETGNIYFGEIKDNKVFKIVYGNVEKSIDTWNKIPLEKSLELNKIYIGKDGEIYVLEEEQKIVKDVKNGKEYKYEGD FLQMYSNGFATIINGNKLHRVYFDSSQNA >Mature_349_residues MDKLKQFLKWGLLSVILQCLVLFVFDKFYFKLNSDVNVKAIDIASQHTKENNDVKLPGNMMDKKISYDGEYIAYLNNNDE LKVFNTLKDDESHVDIENEKASYYTWLRDRNRLIVITNIKYNNKKNTVNLYSIDVDTNKTKKIELGNMNSSYKVNEITVS TKTGVIYIEFKNEDTKESIVKRIDNNDDITDVRLVTDSPGNIEVMPRADRLVYDSEKESGIYLTQPNKKLGINPIYKVRL LGVDETGNIYFGEIKDNKVFKIVYGNVEKSIDTWNKIPLEKSLELNKIYIGKDGEIYVLEEEQKIVKDVKNGKEYKYEGD FLQMYSNGFATIINGNKLHRVYFDSSQNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40476; Mature: 40476
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKLKQFLKWGLLSVILQCLVLFVFDKFYFKLNSDVNVKAIDIASQHTKENNDVKLPGNM CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEEHHCCCCCCCEECCCHH MDKKISYDGEYIAYLNNNDELKVFNTLKDDESHVDIENEKASYYTWLRDRNRLIVITNIK HCCEECCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCEEEEEEECCCCEEEEEEEE YNNKKNTVNLYSIDVDTNKTKKIELGNMNSSYKVNEITVSTKTGVIYIEFKNEDTKESIV ECCCCCEEEEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHH KRIDNNDDITDVRLVTDSPGNIEVMPRADRLVYDSEKESGIYLTQPNKKLGINPIYKVRL HHCCCCCCCEEEEEEECCCCCEEEEECCCEEEECCCCCCCEEEECCCCCCCCCCEEEEEE LGVDETGNIYFGEIKDNKVFKIVYGNVEKSIDTWNKIPLEKSLELNKIYIGKDGEIYVLE EEECCCCCEEEEEECCCEEEEEEECCCHHCCHHHHCCCCCCCCEEEEEEECCCCCEEEEE EEQKIVKDVKNGKEYKYEGDFLQMYSNGFATIINGNKLHRVYFDSSQNA CHHHHHHHHHCCCCEEECCCEEEEECCCEEEEEECCEEEEEEECCCCCC >Mature Secondary Structure MDKLKQFLKWGLLSVILQCLVLFVFDKFYFKLNSDVNVKAIDIASQHTKENNDVKLPGNM CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEEHHCCCCCCCEECCCHH MDKKISYDGEYIAYLNNNDELKVFNTLKDDESHVDIENEKASYYTWLRDRNRLIVITNIK HCCEECCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCEEEEEEECCCCEEEEEEEE YNNKKNTVNLYSIDVDTNKTKKIELGNMNSSYKVNEITVSTKTGVIYIEFKNEDTKESIV ECCCCCEEEEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHH KRIDNNDDITDVRLVTDSPGNIEVMPRADRLVYDSEKESGIYLTQPNKKLGINPIYKVRL HHCCCCCCCEEEEEEECCCCCEEEEECCCEEEECCCCCCCEEEECCCCCCCCCCEEEEEE LGVDETGNIYFGEIKDNKVFKIVYGNVEKSIDTWNKIPLEKSLELNKIYIGKDGEIYVLE EEECCCCCEEEEEECCCEEEEEEECCCHHCCHHHHCCCCCCCCEEEEEEECCCCCEEEEE EEQKIVKDVKNGKEYKYEGDFLQMYSNGFATIINGNKLHRVYFDSSQNA CHHHHHHHHHCCCCEEECCCEEEEECCCEEEEEECCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA