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The map label for this gene is ydeM [C]

Identifier: 18310925

GI number: 18310925

Start: 2225792

End: 2227165

Strand: Reverse

Name: ydeM [C]

Synonym: CPE1943

Alternate gene names: 18310925

Gene position: 2227165-2225792 (Counterclockwise)

Preceding gene: 18310926

Following gene: 18310924

Centisome position: 73.47

GC content: 31.15

Gene sequence:

>1374_bases
GTGGCATTAATTCATAAATTTATGCAAGGTGGAGAGTATTACGTAGTAGACGTAAACTCAGGAAGTGTTCATATTGTCGA
TGACCTTATTTACAATATGATAGATAATGATAACAAATTAAGTAGTAAGGAATCTTTAATTGAAAAGTTAAAAGATAAAT
ATCCAGTTGAGGAAATTGAAGAGGCTTATGAAGATTTACTTCAATTAGTAGAAGAAGACGCTTTATACTCAGGAGATTTA
TATGAAGAGGTTGCTAAAGAAAGTGACAAGGCACCTTCATATATAAAAGCTCTATGCTTAAATGTTGTACATGACTGTAA
TTTAAGATGTAAATATTGTTTCGCTGACGAGGGAGAATACAAAGGATGTAGAAAACCAATGAGTGCTGAAGTTGGTAAAA
AAGCTATTGATTTTGTATTAGCAAATTCAGGTGGAATAAAGAATATAGAAGTTGATTTATTTGGTGGGGAACCACTAATG
GTATTTGATACTATAAAAGAAATAATAGATTATGGTAAGAAAAGAGGACAAGAAGTAGGCAAAAATGTAAGATTTACTAT
GACTACTAATGCAACTCTTTTAAATGATGAAAGAATCGATTATATAGATAAAAACATCGGAAATATAATTCTTTCAATAG
ATGGAAGAAAAGAAGTTAACGATGCTGTTAGAATAAGAGTTGATGGTTCAGGAAGTTATGATAGAATACTTCCAAACATA
AAGAAAATGGTTGAAAAGAGAGATCCAAGTAAACAATATTATGCTAGAGGAACATTTACAAGAAATAATACTGACTTCTT
CCAAGATGTAATGGCTCTTGCTAATGAAGGATTTACTGAGATTTCAATAGAGCCAGTTGTTCTTCCAGATGAACATGAAT
TATCTTTAAGAAGAGAAGATTTACCAATTATCTTTGGAGAGTATGATAAATTATACAATGAAATGGTGAGAAGATTAGAA
GAGGGAGATAACATATTCAAATTCTATCACTTTAACATTGATTTAAATGGTGGTCCTTGTGTTTATAAGAGAATAGCAGG
ATGTGGAGCAGGTCATGAGTATATTGCTGTAACTCCAGATGGAGAAATATATCCATGTCACCAATTTGTTGGAAATACTG
ATTTCTTACTAGGAAATATCTATGATGGAGAAATCAGAAAAGATCTTTCAACAGAATTTAAACAAGCTCACATATATAAT
AAACCAAAATGTAAAGAATGTTGGGCTAGATTTTACTGTAGTGGTGGATGTCAAGCTAATAACTTTAACTTTAATGGCGA
TATTCATGTTCCTTATGAAGTTGGATGTGAAATGCAAAAGAAAAGAATTGAGTGTGCTATTGCATTAAAGTCAAAGACTA
TGGACGCTGAATAA

Upstream 100 bases:

>100_bases
TACAGTAGCAAACTTAGCTTGTGAAAATTAATTATAAAAATTCTTAAGTGGCAGTAACTTTTAAAGTTGCTGCCATAGTT
CTTAGTTAGGAGGAAATATT

Downstream 100 bases:

>100_bases
AAATATAATATTAATAATTGTTGCCATATATTGACTATATGGCAACATATTAATATAATTTAGTTTATCAGAGAAAATTT
TACAGAGGGGGATAACCATG

Product: astB/chuR-related protein

Products: NA

Alternate protein names: AnSME; Cys-type sulfatase-activating enzyme [H]

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MALIHKFMQGGEYYVVDVNSGSVHIVDDLIYNMIDNDNKLSSKESLIEKLKDKYPVEEIEEAYEDLLQLVEEDALYSGDL
YEEVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGCRKPMSAEVGKKAIDFVLANSGGIKNIEVDLFGGEPLM
VFDTIKEIIDYGKKRGQEVGKNVRFTMTTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSYDRILPNI
KKMVEKRDPSKQYYARGTFTRNNTDFFQDVMALANEGFTEISIEPVVLPDEHELSLRREDLPIIFGEYDKLYNEMVRRLE
EGDNIFKFYHFNIDLNGGPCVYKRIAGCGAGHEYIAVTPDGEIYPCHQFVGNTDFLLGNIYDGEIRKDLSTEFKQAHIYN
KPKCKECWARFYCSGGCQANNFNFNGDIHVPYEVGCEMQKKRIECAIALKSKTMDAE

Sequences:

>Translated_457_residues
MALIHKFMQGGEYYVVDVNSGSVHIVDDLIYNMIDNDNKLSSKESLIEKLKDKYPVEEIEEAYEDLLQLVEEDALYSGDL
YEEVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGCRKPMSAEVGKKAIDFVLANSGGIKNIEVDLFGGEPLM
VFDTIKEIIDYGKKRGQEVGKNVRFTMTTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSYDRILPNI
KKMVEKRDPSKQYYARGTFTRNNTDFFQDVMALANEGFTEISIEPVVLPDEHELSLRREDLPIIFGEYDKLYNEMVRRLE
EGDNIFKFYHFNIDLNGGPCVYKRIAGCGAGHEYIAVTPDGEIYPCHQFVGNTDFLLGNIYDGEIRKDLSTEFKQAHIYN
KPKCKECWARFYCSGGCQANNFNFNGDIHVPYEVGCEMQKKRIECAIALKSKTMDAE
>Mature_456_residues
ALIHKFMQGGEYYVVDVNSGSVHIVDDLIYNMIDNDNKLSSKESLIEKLKDKYPVEEIEEAYEDLLQLVEEDALYSGDLY
EEVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGCRKPMSAEVGKKAIDFVLANSGGIKNIEVDLFGGEPLMV
FDTIKEIIDYGKKRGQEVGKNVRFTMTTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSYDRILPNIK
KMVEKRDPSKQYYARGTFTRNNTDFFQDVMALANEGFTEISIEPVVLPDEHELSLRREDLPIIFGEYDKLYNEMVRRLEE
GDNIFKFYHFNIDLNGGPCVYKRIAGCGAGHEYIAVTPDGEIYPCHQFVGNTDFLLGNIYDGEIRKDLSTEFKQAHIYNK
PKCKECWARFYCSGGCQANNFNFNGDIHVPYEVGCEMQKKRIECAIALKSKTMDAE

Specific function: Involved in 'Cys-type' sulfatase maturation under anaerobic conditions. Catalyzes the post-translational modification of cysteine into 3-oxoalanine (also known as C(alpha)-formylglycine (FGly)), by a free radical chemical mechanism initiated via the reduc

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 52073; Mature: 51941

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALIHKFMQGGEYYVVDVNSGSVHIVDDLIYNMIDNDNKLSSKESLIEKLKDKYPVEEIE
CHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
EAYEDLLQLVEEDALYSGDLYEEVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEY
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
KGCRKPMSAEVGKKAIDFVLANSGGIKNIEVDLFGGEPLMVFDTIKEIIDYGKKRGQEVG
CCCCCCCHHHHHHHHEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
KNVRFTMTTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSYDRILPNI
CCEEEEEECCEEEECCCHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHH
KKMVEKRDPSKQYYARGTFTRNNTDFFQDVMALANEGFTEISIEPVVLPDEHELSLRRED
HHHHHHCCCCHHHEECCCEECCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCC
LPIIFGEYDKLYNEMVRRLEEGDNIFKFYHFNIDLNGGPCVYKRIAGCGAGHEYIAVTPD
CCEEECCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHCCCCCCCEEEECCC
GEIYPCHQFVGNTDFLLGNIYDGEIRKDLSTEFKQAHIYNKPKCKECWARFYCSGGCQAN
CCEEEHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
NFNFNGDIHVPYEVGCEMQKKRIECAIALKSKTMDAE
CCCCCCCEECCHHHCCHHHHHHEEEEEEEECCCCCCC
>Mature Secondary Structure 
ALIHKFMQGGEYYVVDVNSGSVHIVDDLIYNMIDNDNKLSSKESLIEKLKDKYPVEEIE
HHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
EAYEDLLQLVEEDALYSGDLYEEVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEY
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
KGCRKPMSAEVGKKAIDFVLANSGGIKNIEVDLFGGEPLMVFDTIKEIIDYGKKRGQEVG
CCCCCCCHHHHHHHHEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
KNVRFTMTTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSYDRILPNI
CCEEEEEECCEEEECCCHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHH
KKMVEKRDPSKQYYARGTFTRNNTDFFQDVMALANEGFTEISIEPVVLPDEHELSLRRED
HHHHHHCCCCHHHEECCCEECCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCC
LPIIFGEYDKLYNEMVRRLEEGDNIFKFYHFNIDLNGGPCVYKRIAGCGAGHEYIAVTPD
CCEEECCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHCCCCCCCEEEECCC
GEIYPCHQFVGNTDFLLGNIYDGEIRKDLSTEFKQAHIYNKPKCKECWARFYCSGGCQAN
CCEEEHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
NFNFNGDIHVPYEVGCEMQKKRIECAIALKSKTMDAE
CCCCCCCEECCHHHCCHHHHHHEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA