| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310910
Identifier: 18310910
GI number: 18310910
Start: 2209361
End: 2210347
Strand: Reverse
Name: 18310910
Synonym: CPE1928
Alternate gene names: NA
Gene position: 2210347-2209361 (Counterclockwise)
Preceding gene: 18310911
Following gene: 18310909
Centisome position: 72.91
GC content: 27.96
Gene sequence:
>987_bases GTGAACTTTTATAGGAATTTACCTATAAAGATTTTTATGAAATTTATAGATTTTCATTGTGATACAGCATCACGTATGCT TCAAGAAAATAAAAAGCTTTTTAGAAATGATTTGAAGGTTGATATAAATAAATTAAGAGAAGGAGAGGCTTTAGCACAAT TTTTTGCTTTGTTTATAAATAAAGAATGTAATTCTGATACTTATTCTTATTGCAAAGAAATGCTACAGAATTTTAAAAGA GAAATAAATGAGAATTCAAGAGATATAGTCTTATGCAGAAATATAAGTGATTTAGAAAAGGCAGAGAAAGAGGATAAAAT AGGGGCCTTTATAACTATTGAAGAGGGAGATGCAATTAAGGGTAATATTGAAAAGTTAAGGGAGTTTAAAGAAGAGGGAG TTTCTTTAATAACCTTAACTTGGAATTATATAAATGACTTAGGATATCCAAATTATGAGTTTAAATACAAGGATAAGGGT CTTACTAAAAAGGGTATAGAAGTTGTGGAAGAAATGAATAATCTAGGAATGTTAATAGATGTTTCTCATCTTTCTGATGG AGGATTCTATGATGCAATAAAATATTCAAAGAGTCCAATTATAGCATCTCATTCTAATAGTAGAACAAAGACTAATCATA GCAGAAATTTAACTGACCATATGATTAAAGAGTTAGCTAATAGTGGTGGGGTAACAGGAATAAATTTTTGCAATGCTTTC TTAAAAGAAGAGTGGGAAGAGGATTTAAATTTAGCTTCCATAAGAAATATGGTTAGACATATAAAACACATAAGAAATAT TGGGGGAATAGATGTTATTTCCTTAGGATCTGATTTTGATGGTATAGAAAATGAAGTTGAAATTAAAGATTCAAGTAAGA TGAATTTATTATTAAATGCTTTGGAAATTGAAGGATTTAAAGGGGAGGAAATAGAGAAAATATATTATAAGAATGCAAAG AGAATAATAAGAGATGTTTTAAGATAG
Upstream 100 bases:
>100_bases TTTTTTAATAATAATAGTATTACAAGAGAATAATTTAAAAAGAGAAAAATTTTTGATATAGTTTATATTGTGAAAATATT CATATTACTAGATGAAAGAG
Downstream 100 bases:
>100_bases TCTTATAACTTAGTTATATAATGATTTATGAAAATAAACTTTAATACAACTTTTAAGAATTTTAATGTTATGCAGAAAAG GATGAAGGATTAATGGAGAA
Product: dipeptidase family protein
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MNFYRNLPIKIFMKFIDFHCDTASRMLQENKKLFRNDLKVDINKLREGEALAQFFALFINKECNSDTYSYCKEMLQNFKR EINENSRDIVLCRNISDLEKAEKEDKIGAFITIEEGDAIKGNIEKLREFKEEGVSLITLTWNYINDLGYPNYEFKYKDKG LTKKGIEVVEEMNNLGMLIDVSHLSDGGFYDAIKYSKSPIIASHSNSRTKTNHSRNLTDHMIKELANSGGVTGINFCNAF LKEEWEEDLNLASIRNMVRHIKHIRNIGGIDVISLGSDFDGIENEVEIKDSSKMNLLLNALEIEGFKGEEIEKIYYKNAK RIIRDVLR
Sequences:
>Translated_328_residues MNFYRNLPIKIFMKFIDFHCDTASRMLQENKKLFRNDLKVDINKLREGEALAQFFALFINKECNSDTYSYCKEMLQNFKR EINENSRDIVLCRNISDLEKAEKEDKIGAFITIEEGDAIKGNIEKLREFKEEGVSLITLTWNYINDLGYPNYEFKYKDKG LTKKGIEVVEEMNNLGMLIDVSHLSDGGFYDAIKYSKSPIIASHSNSRTKTNHSRNLTDHMIKELANSGGVTGINFCNAF LKEEWEEDLNLASIRNMVRHIKHIRNIGGIDVISLGSDFDGIENEVEIKDSSKMNLLLNALEIEGFKGEEIEKIYYKNAK RIIRDVLR >Mature_328_residues MNFYRNLPIKIFMKFIDFHCDTASRMLQENKKLFRNDLKVDINKLREGEALAQFFALFINKECNSDTYSYCKEMLQNFKR EINENSRDIVLCRNISDLEKAEKEDKIGAFITIEEGDAIKGNIEKLREFKEEGVSLITLTWNYINDLGYPNYEFKYKDKG LTKKGIEVVEEMNNLGMLIDVSHLSDGGFYDAIKYSKSPIIASHSNSRTKTNHSRNLTDHMIKELANSGGVTGINFCNAF LKEEWEEDLNLASIRNMVRHIKHIRNIGGIDVISLGSDFDGIENEVEIKDSSKMNLLLNALEIEGFKGEEIEKIYYKNAK RIIRDVLR
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI11641269, Length=302, Percent_Identity=27.1523178807947, Blast_Score=115, Evalue=6e-26, Organism=Homo sapiens, GI193211608, Length=333, Percent_Identity=25.5255255255255, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI189458885, Length=297, Percent_Identity=25.2525252525253, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI4758190, Length=297, Percent_Identity=25.2525252525253, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI193211610, Length=333, Percent_Identity=25.8258258258258, Blast_Score=109, Evalue=4e-24, Organism=Drosophila melanogaster, GI221475880, Length=293, Percent_Identity=30.3754266211604, Blast_Score=146, Evalue=2e-35, Organism=Drosophila melanogaster, GI281362638, Length=299, Percent_Identity=31.7725752508361, Blast_Score=146, Evalue=2e-35, Organism=Drosophila melanogaster, GI281362636, Length=299, Percent_Identity=31.7725752508361, Blast_Score=146, Evalue=2e-35, Organism=Drosophila melanogaster, GI161083233, Length=294, Percent_Identity=29.2517006802721, Blast_Score=134, Evalue=1e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 37943; Mature: 37943
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFYRNLPIKIFMKFIDFHCDTASRMLQENKKLFRNDLKVDINKLREGEALAQFFALFIN CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC KECNSDTYSYCKEMLQNFKREINENSRDIVLCRNISDLEKAEKEDKIGAFITIEEGDAIK CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCEEEEEECCCCCC GNIEKLREFKEEGVSLITLTWNYINDLGYPNYEFKYKDKGLTKKGIEVVEEMNNLGMLID CCHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEE VSHLSDGGFYDAIKYSKSPIIASHSNSRTKTNHSRNLTDHMIKELANSGGVTGINFCNAF ECCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH LKEEWEEDLNLASIRNMVRHIKHIRNIGGIDVISLGSDFDGIENEVEIKDSSKMNLLLNA HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHH LEIEGFKGEEIEKIYYKNAKRIIRDVLR HHHCCCCCCHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MNFYRNLPIKIFMKFIDFHCDTASRMLQENKKLFRNDLKVDINKLREGEALAQFFALFIN CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC KECNSDTYSYCKEMLQNFKREINENSRDIVLCRNISDLEKAEKEDKIGAFITIEEGDAIK CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCEEEEEECCCCCC GNIEKLREFKEEGVSLITLTWNYINDLGYPNYEFKYKDKGLTKKGIEVVEEMNNLGMLID CCHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEE VSHLSDGGFYDAIKYSKSPIIASHSNSRTKTNHSRNLTDHMIKELANSGGVTGINFCNAF ECCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH LKEEWEEDLNLASIRNMVRHIKHIRNIGGIDVISLGSDFDGIENEVEIKDSSKMNLLLNA HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHH LEIEGFKGEEIEKIYYKNAKRIIRDVLR HHHCCCCCCHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]