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The map label for this gene is ctc

Identifier: 18310856

GI number: 18310856

Start: 2145056

End: 2145667

Strand: Reverse

Name: ctc

Synonym: CPE1874

Alternate gene names: 18310856

Gene position: 2145667-2145056 (Counterclockwise)

Preceding gene: 18310857

Following gene: 18310855

Centisome position: 70.78

GC content: 30.56

Gene sequence:

>612_bases
ATGATGGAAAATTTACAAGTAAATCAAAGAGAAAAAAAGACTAGACATTCAAGTAGACAGTGCAGAAGAAAGGGATTAGT
TCCTGGAGTTATATACGGAAAAGGAATTAATAATTTCTTATTTGAAATAGGAGAATTAGAACTTAATCATGCTCTTTCTG
TAACTGGTGAACATGGACTTTTAAGCATAAATTCACAAGAGGGTTCTTTAAATACTCTTATAAAAGAAGTTCAAAGAGAT
CCTGTAACTAGAAGGGTATTACATATAGATTTAGAAAAGGTTGAAGGTAATGAAGAAATAGAAACAGCTGTTCCTATAAA
TTACGTTGGAGAAGAATACATAAATAAATTAGATGCTGTGTTACAAAAGAATTTAGATAGCATAAAGGTAAAGTGCTCTC
CATCTAATATTCCAAAGGGAGTAAATTTAAATGTGGGAAGAGCTAAGCCAGGAGATCAATTTAAGATTGCAGATGTAGAA
TTTGGAAATGAAATAACAGTAGTTGATGATTTAAATTCTATAGTAGCTTCTGTAAGTTATGATCAAAAGATAATAACTCA
AGAGGTTGTGGATCAAGAAGTAGCTGAAAATAGAGCTAAAAAGGAAAGTTAA

Upstream 100 bases:

>100_bases
ATCAAAATTTATTTTGAGAAAGTCCTCTTTATTTATATAAGACATTAAAGTTTATGAATAATAAAATGAATTTTGGAGAT
AATACTTAAAAGGAGGGATG

Downstream 100 bases:

>100_bases
TATAAGCTTAATATAAATTAGAGTAAAAATGGGATTATTTTGTTTACAGTTCCATTTTTACTTTTTTTTGTTTTCAAATT
TCAAAATATTGTAGTATAAT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MMENLQVNQREKKTRHSSRQCRRKGLVPGVIYGKGINNFLFEIGELELNHALSVTGEHGLLSINSQEGSLNTLIKEVQRD
PVTRRVLHIDLEKVEGNEEIETAVPINYVGEEYINKLDAVLQKNLDSIKVKCSPSNIPKGVNLNVGRAKPGDQFKIADVE
FGNEITVVDDLNSIVASVSYDQKIITQEVVDQEVAENRAKKES

Sequences:

>Translated_203_residues
MMENLQVNQREKKTRHSSRQCRRKGLVPGVIYGKGINNFLFEIGELELNHALSVTGEHGLLSINSQEGSLNTLIKEVQRD
PVTRRVLHIDLEKVEGNEEIETAVPINYVGEEYINKLDAVLQKNLDSIKVKCSPSNIPKGVNLNVGRAKPGDQFKIADVE
FGNEITVVDDLNSIVASVSYDQKIITQEVVDQEVAENRAKKES
>Mature_203_residues
MMENLQVNQREKKTRHSSRQCRRKGLVPGVIYGKGINNFLFEIGELELNHALSVTGEHGLLSINSQEGSLNTLIKEVQRD
PVTRRVLHIDLEKVEGNEEIETAVPINYVGEEYINKLDAVLQKNLDSIKVKCSPSNIPKGVNLNVGRAKPGDQFKIADVE
FGNEITVVDDLNSIVASVSYDQKIITQEVVDQEVAENRAKKES

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_CLOPE (Q8XJ87)

Other databases:

- EMBL:   BA000016
- RefSeq:   NP_562790.1
- ProteinModelPortal:   Q8XJ87
- SMR:   Q8XJ87
- GeneID:   990184
- GenomeReviews:   BA000016_GR
- KEGG:   cpe:CPE1874
- NMPDR:   fig|195102.1.peg.1937
- HOGENOM:   HBG731986
- OMA:   ELIMKKG
- ProtClustDB:   PRK05618
- BioCyc:   CPER195102:CPE1874-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 22678; Mature: 22678

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMENLQVNQREKKTRHSSRQCRRKGLVPGVIYGKGINNFLFEIGELELNHALSVTGEHGL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCEEECCEEEECCCCCE
LSINSQEGSLNTLIKEVQRDPVTRRVLHIDLEKVEGNEEIETAVPINYVGEEYINKLDAV
EEEECCCCHHHHHHHHHHHCCHHHHHHEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
LQKNLDSIKVKCSPSNIPKGVNLNVGRAKPGDQFKIADVEFGNEITVVDDLNSIVASVSY
HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECHHHHHHHHCC
DQKIITQEVVDQEVAENRAKKES
CHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMENLQVNQREKKTRHSSRQCRRKGLVPGVIYGKGINNFLFEIGELELNHALSVTGEHGL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCEEECCEEEECCCCCE
LSINSQEGSLNTLIKEVQRDPVTRRVLHIDLEKVEGNEEIETAVPINYVGEEYINKLDAV
EEEECCCCHHHHHHHHHHHCCHHHHHHEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
LQKNLDSIKVKCSPSNIPKGVNLNVGRAKPGDQFKIADVEFGNEITVVDDLNSIVASVSY
HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECHHHHHHHHCC
DQKIITQEVVDQEVAENRAKKES
CHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842