| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is ylxW [H]
Identifier: 18310837
GI number: 18310837
Start: 2124654
End: 2125385
Strand: Reverse
Name: ylxW [H]
Synonym: CPE1855
Alternate gene names: 18310837
Gene position: 2125385-2124654 (Counterclockwise)
Preceding gene: 18310838
Following gene: 18310836
Centisome position: 70.11
GC content: 28.42
Gene sequence:
>732_bases TTGAAAAATAGAGAATTTACTATTTTTATATTTACAGCTTCCGTTATAGTTGGACTTTTAATATCTATGAATATAAGTTT TGATGGAATAGAAACTACAAAGGTGTTAAATGCTAAAGAATATCAAGAGGCATATAATAAACGTAACAATCTTTATAATG AAATATCAAAGTTAAAGGAAAATAATAGGGAATTACAAAAGAAGATAAATAATTATTCAAAGAATGATGAGGATAGCAAT AAAATTTCAAAGGATATGATAGAAGAGTTAAATAATAATTTAATGCTTTCAGGATTAGAAGAGGCTAAAGGACCAGGTTT AAAAATAGTTTTAGAGGATGGTGGAGAAGCTTTTAGTGGAGAAGTAGTTGATGATTTCATGAGACTTTTAAGAACTATTC ATGATGATGATATGATAAAAGTCATAAATGAACTTAAGGCTGCAGGCGCAGAGGCAATATCTATAAATAACCAAAGAATA ATATATAATACAGAGATATATTGTGGAGGACAGTTTTTACGAATGAATGGAGTTAAAATACCAGCTCCCTTTTATGTTAA TGTCATAGGTGATCCTGAAAAAATGGAGAATCAAATTATGAGAGACGGAAGTTATATTAAAACTCTTATGAATAGAGGAA TAAAGGTTCAAATAACTAAGAGTGACGACATAACTATGCCAGCATATATAAGTGATATGAATTCTAAGTATATGGAACCT AATACAAAGTAA
Upstream 100 bases:
>100_bases TGCAGCTGTAATAGTATTTGGTAGTAGAATATTTAATAACTTTGCAGCTATAAGAAGGATATTGTTAGATAAAAGCAAAG AACGATAAAGAGGTGATGCT
Downstream 100 bases:
>100_bases AAGAACTATGTTTTGTAAAAAATTTGTACAAAAAAGAAGGATTTTCTATTCCTATAAAGAAGAATATAATGTAATATATA ATTAAAGGAGACAGTAAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MKNREFTIFIFTASVIVGLLISMNISFDGIETTKVLNAKEYQEAYNKRNNLYNEISKLKENNRELQKKINNYSKNDEDSN KISKDMIEELNNNLMLSGLEEAKGPGLKIVLEDGGEAFSGEVVDDFMRLLRTIHDDDMIKVINELKAAGAEAISINNQRI IYNTEIYCGGQFLRMNGVKIPAPFYVNVIGDPEKMENQIMRDGSYIKTLMNRGIKVQITKSDDITMPAYISDMNSKYMEP NTK
Sequences:
>Translated_243_residues MKNREFTIFIFTASVIVGLLISMNISFDGIETTKVLNAKEYQEAYNKRNNLYNEISKLKENNRELQKKINNYSKNDEDSN KISKDMIEELNNNLMLSGLEEAKGPGLKIVLEDGGEAFSGEVVDDFMRLLRTIHDDDMIKVINELKAAGAEAISINNQRI IYNTEIYCGGQFLRMNGVKIPAPFYVNVIGDPEKMENQIMRDGSYIKTLMNRGIKVQITKSDDITMPAYISDMNSKYMEP NTK >Mature_243_residues MKNREFTIFIFTASVIVGLLISMNISFDGIETTKVLNAKEYQEAYNKRNNLYNEISKLKENNRELQKKINNYSKNDEDSN KISKDMIEELNNNLMLSGLEEAKGPGLKIVLEDGGEAFSGEVVDDFMRLLRTIHDDDMIKVINELKAAGAEAISINNQRI IYNTEIYCGGQFLRMNGVKIPAPFYVNVIGDPEKMENQIMRDGSYIKTLMNRGIKVQITKSDDITMPAYISDMNSKYMEP NTK
Specific function: May be involved in cell division and sporulation [H]
COG id: COG3879
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0749 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010273 [H]
Pfam domain/function: PF05949 DUF881 [H]
EC number: NA
Molecular weight: Translated: 27692; Mature: 27692
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNREFTIFIFTASVIVGLLISMNISFDGIETTKVLNAKEYQEAYNKRNNLYNEISKLKE CCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHH NNRELQKKINNYSKNDEDSNKISKDMIEELNNNLMLSGLEEAKGPGLKIVLEDGGEAFSG HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHCCCCCEEEEEECCCCCCCC EVVDDFMRLLRTIHDDDMIKVINELKAAGAEAISINNQRIIYNTEIYCGGQFLRMNGVKI HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEECCEEEEECCEEC PAPFYVNVIGDPEKMENQIMRDGSYIKTLMNRGIKVQITKSDDITMPAYISDMNSKYMEP CCCEEEEECCCHHHHHHHHHHCCHHHHHHHHCCEEEEEECCCCCCCCHHHHHCCHHCCCC NTK CCC >Mature Secondary Structure MKNREFTIFIFTASVIVGLLISMNISFDGIETTKVLNAKEYQEAYNKRNNLYNEISKLKE CCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHH NNRELQKKINNYSKNDEDSNKISKDMIEELNNNLMLSGLEEAKGPGLKIVLEDGGEAFSG HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHCCCCCEEEEEECCCCCCCC EVVDDFMRLLRTIHDDDMIKVINELKAAGAEAISINNQRIIYNTEIYCGGQFLRMNGVKI HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEECCEEEEECCEEC PAPFYVNVIGDPEKMENQIMRDGSYIKTLMNRGIKVQITKSDDITMPAYISDMNSKYMEP CCCEEEEECCCHHHHHHHHHHCCHHHHHHHHCCEEEEEECCCCCCCCHHHHHCCHHCCCC NTK CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2556375; 9384377; 12207695 [H]