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The map label for this gene is nusB

Identifier: 18310806

GI number: 18310806

Start: 2102298

End: 2102705

Strand: Reverse

Name: nusB

Synonym: CPE1824

Alternate gene names: 18310806

Gene position: 2102705-2102298 (Counterclockwise)

Preceding gene: 18310807

Following gene: 18310805

Centisome position: 69.36

GC content: 24.75

Gene sequence:

>408_bases
ATGAATAGAGTAAAATCAAGAGAATATTTATTACAATTAGCTTACCAAATGGAAATAACTTCAGAAACTGCATTAGAAAC
TTTCAATTCTTTTATGGAGAACGAGGACATTTCTAAGGATGATTTAGATCTAGCATACATAAAATCAGGATTATTAGGAA
TAGAAGAAAATAAGGAAAAGTTAGATTCTTTAATAGAAAGTCAACTTGTAAAATGGAAATTAAACAGAATTTCAAAAGTT
AACTTATCAATTTTAAGAATTTCTACATATGAAATATTATTTGCAGAGGATGTACCAGGAAAGGTATCAATAAATGAAGC
TATTGAATTATGTAAAAAATATTCAGATAATAAATCAGTTTCATTTATAAATGGAGTTTTAGATAAAGTATATAAGAATA
TGCAATAG

Upstream 100 bases:

>100_bases
AGAGGGTGTTTCATTGTGTTAAATCATTAACTATATGATTAATAATATAAATTAAGACAATAATACTAAATAGAGTATTT
TCAAAACATAGGAGGATATA

Downstream 100 bases:

>100_bases
GGGCTAAATTTATTTTTACTAGAATTATAAGATTTGGAGGGGCAGGTAATGGATAAAATTTTAAGCGGAAAAACAGTGGC
TATAGACATAAAGGGGCAAA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEKLDSLIESQLVKWKLNRISKV
NLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSVSFINGVLDKVYKNMQ

Sequences:

>Translated_135_residues
MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEKLDSLIESQLVKWKLNRISKV
NLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSVSFINGVLDKVYKNMQ
>Mature_135_residues
MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEKLDSLIESQLVKWKLNRISKV
NLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSVSFINGVLDKVYKNMQ

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=123, Percent_Identity=34.9593495934959, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_CLOP1 (Q0TPD3)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_696507.1
- ProteinModelPortal:   Q0TPD3
- SMR:   Q0TPD3
- STRING:   Q0TPD3
- GeneID:   4201027
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_2078
- TIGR:   CPF_2078
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   MELLFGM
- ProtClustDB:   PRK00202
- BioCyc:   CPER195103:CPF_2078-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 15580; Mature: 15580

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHH
LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV
HHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCEEHHHHHHHHHHCCCCCCH
SFINGVLDKVYKNMQ
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHH
LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV
HHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCEEHHHHHHHHHHCCCCCCH
SFINGVLDKVYKNMQ
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA