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The map label for this gene is hlyD [H]

Identifier: 18310800

GI number: 18310800

Start: 2096397

End: 2097212

Strand: Reverse

Name: hlyD [H]

Synonym: CPE1818

Alternate gene names: 18310800

Gene position: 2097212-2096397 (Counterclockwise)

Preceding gene: 18310801

Following gene: 18310799

Centisome position: 69.18

GC content: 31.74

Gene sequence:

>816_bases
ATGGCAGAAAAAAAAGAGAAAAAAGAAAGACTTGACGTACTTCTTGTTGAACAAGGTATTGCTGAGTCAAGAGAAAAAGC
TAAAAGATATATAATGGCAGGTATGGTATTCATAGGAGAAAAGAGAGTTGATAAGGCTGGAGAAAAGGTTCCTGTAAGCT
CAAATATCATATTTAGAGGAGAAAAACTACCTTTTGTTAGTAGAGGTGGATTTAAACTTGATAAGGCAGTTAAATCCTTT
GGAATAGACCTTAAAGGAAAGAGATGCTTAGATATTGGAGCATCAACTGGTGGATTTACTGACTGTATGCTTCAAAATGA
TGCTTCAAAAGTATTTTCAATTGATGTTGGTTATGGACAATTTGCTTGGAAACTTAGAGTAGATCCAAGAGTTGTCTGTA
TGGAAAGAACTAACGTAAGATATGTAACCCCAGAGCAAATAGGAGAATTATGTGATTTTGCATCAATAGATGTATCTTTT
ATATCACTAACAACAGTTTTGCCAGCTGTACTTAATCTTTTAAATGATAATGGAGAAGTTATGGCTCTTATTAAGCCTCA
ATTTGAAGCTGGCAGAGAAAAGGTTGGTAAGAAGGGTGTTGTAAGAGAAGCTTCTACTCATAAAGAAGTAATTAAGAAAA
TTGTTGATTTTGCTTTATCACACAAATTAAATATATTAGGTCTTGATTTCTCTCCTATAAAAGGACCTGAAGGAAATATA
GAATATTTAATATATTTAAAGAAGGATAACAATACAGAAGAGTTTGATTATAATATTATAGATGAAGTTGTAGATAAATC
TCATAGTGATTTATAA

Upstream 100 bases:

>100_bases
TTATAGAACATGGCAAGCCTGATATTTTATATAAAATTAATGGGTTAGATGCAGAGGGAATAAAAAACACATTAATTGAA
TTACTTTAAAGGAGAAAATT

Downstream 100 bases:

>100_bases
AGATTAAATTATTAAATAAGAAATATTAATTTTATAATTACTTTAGAGAGACTGCATAGTTAAAGTAAAGGTGTGTTTTG
GGGCATGAGAAATATAGGAA

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MAEKKEKKERLDVLLVEQGIAESREKAKRYIMAGMVFIGEKRVDKAGEKVPVSSNIIFRGEKLPFVSRGGFKLDKAVKSF
GIDLKGKRCLDIGASTGGFTDCMLQNDASKVFSIDVGYGQFAWKLRVDPRVVCMERTNVRYVTPEQIGELCDFASIDVSF
ISLTTVLPAVLNLLNDNGEVMALIKPQFEAGREKVGKKGVVREASTHKEVIKKIVDFALSHKLNILGLDFSPIKGPEGNI
EYLIYLKKDNNTEEFDYNIIDEVVDKSHSDL

Sequences:

>Translated_271_residues
MAEKKEKKERLDVLLVEQGIAESREKAKRYIMAGMVFIGEKRVDKAGEKVPVSSNIIFRGEKLPFVSRGGFKLDKAVKSF
GIDLKGKRCLDIGASTGGFTDCMLQNDASKVFSIDVGYGQFAWKLRVDPRVVCMERTNVRYVTPEQIGELCDFASIDVSF
ISLTTVLPAVLNLLNDNGEVMALIKPQFEAGREKVGKKGVVREASTHKEVIKKIVDFALSHKLNILGLDFSPIKGPEGNI
EYLIYLKKDNNTEEFDYNIIDEVVDKSHSDL
>Mature_270_residues
AEKKEKKERLDVLLVEQGIAESREKAKRYIMAGMVFIGEKRVDKAGEKVPVSSNIIFRGEKLPFVSRGGFKLDKAVKSFG
IDLKGKRCLDIGASTGGFTDCMLQNDASKVFSIDVGYGQFAWKLRVDPRVVCMERTNVRYVTPEQIGELCDFASIDVSFI
SLTTVLPAVLNLLNDNGEVMALIKPQFEAGREKVGKKGVVREASTHKEVIKKIVDFALSHKLNILGLDFSPIKGPEGNIE
YLIYLKKDNNTEEFDYNIIDEVVDKSHSDL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30269; Mature: 30138

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKKEKKERLDVLLVEQGIAESREKAKRYIMAGMVFIGEKRVDKAGEKVPVSSNIIFRG
CCCHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHHHEECCHHHHHCCCCCCCCCCEEEEC
EKLPFVSRGGFKLDKAVKSFGIDLKGKRCLDIGASTGGFTDCMLQNDASKVFSIDVGYGQ
CCCCEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEECCCCCEEEEEECCCCE
FAWKLRVDPRVVCMERTNVRYVTPEQIGELCDFASIDVSFISLTTVLPAVLNLLNDNGEV
EEEEEECCCEEEEEECCCEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
MALIKPQFEAGREKVGKKGVVREASTHKEVIKKIVDFALSHKLNILGLDFSPIKGPEGNI
EEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCE
EYLIYLKKDNNTEEFDYNIIDEVVDKSHSDL
EEEEEEEECCCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AEKKEKKERLDVLLVEQGIAESREKAKRYIMAGMVFIGEKRVDKAGEKVPVSSNIIFRG
CCHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHHHEECCHHHHHCCCCCCCCCCEEEEC
EKLPFVSRGGFKLDKAVKSFGIDLKGKRCLDIGASTGGFTDCMLQNDASKVFSIDVGYGQ
CCCCEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEECCCCCEEEEEECCCCE
FAWKLRVDPRVVCMERTNVRYVTPEQIGELCDFASIDVSFISLTTVLPAVLNLLNDNGEV
EEEEEECCCEEEEEECCCEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
MALIKPQFEAGREKVGKKGVVREASTHKEVIKKIVDFALSHKLNILGLDFSPIKGPEGNI
EEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCE
EYLIYLKKDNNTEEFDYNIIDEVVDKSHSDL
EEEEEEEECCCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]