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The map label for this gene is nifU [H]

Identifier: 18310766

GI number: 18310766

Start: 2063817

End: 2064245

Strand: Reverse

Name: nifU [H]

Synonym: CPE1784

Alternate gene names: 18310766

Gene position: 2064245-2063817 (Counterclockwise)

Preceding gene: 18310767

Following gene: 18310765

Centisome position: 68.09

GC content: 34.5

Gene sequence:

>429_bases
ATGATATATAGTGAAAAAGTTATGGATCATTTCAAAAACCCAAGAAATGTAGGAGAAATTAAAGACGCTAACGGAATCGG
AGAAGTTGGTAACGCTAAATGTGGAGATATAATGAGAATATATCTTAAAATAGAAAATAACATTGTAGAAGATGTTAAAT
TTGAAACTTATGGATGTGGATCTGCTATAGCTTCATCAAGTATGGCTACAGAGCTTATAAAAGGAAAAACTGTAGAAGAA
GCTTGGGAATTATCAAACAAAGCTGTTGCAGAAGCTTTAGATGGTCTTCCACCAGTAAAAATGCACTGTTCAGTATTAGC
TGAGGAAGCTATACACAAGGCTATAAACGACTATAGACAAAGACAAGGATTAGAGCCTTGGGATATGAAAGAACATTCAC
ATGACATACATGAGCATGTTCACGGTTAA

Upstream 100 bases:

>100_bases
ATTACGTATTAGAAAAAGTACCACCAATAATCGCAAGATTAAGAAGTATGTCACCATTATGGAAAAATCATTTAAGAGAA
GTAGAAGGAGAGAATTAATT

Downstream 100 bases:

>100_bases
GAATAATATTAAAGTGGTGATTTTGTGACAAAGAAAAAGGTTGTTATAGGTATGAGCGGCGGAGTTGATAGCTCCGTTGC
TGCTTACCTTTTAAAGGAAC

Product: nitrogen fixation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MIYSEKVMDHFKNPRNVGEIKDANGIGEVGNAKCGDIMRIYLKIENNIVEDVKFETYGCGSAIASSSMATELIKGKTVEE
AWELSNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDYRQRQGLEPWDMKEHSHDIHEHVHG

Sequences:

>Translated_142_residues
MIYSEKVMDHFKNPRNVGEIKDANGIGEVGNAKCGDIMRIYLKIENNIVEDVKFETYGCGSAIASSSMATELIKGKTVEE
AWELSNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDYRQRQGLEPWDMKEHSHDIHEHVHG
>Mature_142_residues
MIYSEKVMDHFKNPRNVGEIKDANGIGEVGNAKCGDIMRIYLKIENNIVEDVKFETYGCGSAIASSSMATELIKGKTVEE
AWELSNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDYRQRQGLEPWDMKEHSHDIHEHVHG

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=125, Percent_Identity=51.2, Blast_Score=132, Evalue=7e-32,
Organism=Homo sapiens, GI24307953, Length=124, Percent_Identity=50.8064516129032, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1788878, Length=126, Percent_Identity=53.1746031746032, Blast_Score=139, Evalue=8e-35,
Organism=Caenorhabditis elegans, GI17543474, Length=126, Percent_Identity=51.5873015873016, Blast_Score=129, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6325122, Length=126, Percent_Identity=50, Blast_Score=130, Evalue=9e-32,
Organism=Saccharomyces cerevisiae, GI6324800, Length=126, Percent_Identity=49.2063492063492, Blast_Score=127, Evalue=6e-31,
Organism=Drosophila melanogaster, GI21355597, Length=125, Percent_Identity=52.8, Blast_Score=132, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 15860; Mature: 15860

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSEKVMDHFKNPRNVGEIKDANGIGEVGNAKCGDIMRIYLKIENNIVEDVKFETYGCG
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCH
SAIASSSMATELIKGKTVEEAWELSNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDYRQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
RQGLEPWDMKEHSHDIHEHVHG
HCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MIYSEKVMDHFKNPRNVGEIKDANGIGEVGNAKCGDIMRIYLKIENNIVEDVKFETYGCG
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCH
SAIASSSMATELIKGKTVEEAWELSNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDYRQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
RQGLEPWDMKEHSHDIHEHVHG
HCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]