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The map label for this gene is rpoZ

Identifier: 18310729

GI number: 18310729

Start: 2025081

End: 2025293

Strand: Reverse

Name: rpoZ

Synonym: CPE1747

Alternate gene names: 18310729

Gene position: 2025293-2025081 (Counterclockwise)

Preceding gene: 18310730

Following gene: 18310728

Centisome position: 66.81

GC content: 29.11

Gene sequence:

>213_bases
ATGAACAACTCTATGATTAATCCATCAATCGTTGATTTATTAAAAAGGGTAGAAGATAGATATTCTTTAGTAATATTAAG
TGCTAAGAGAGCAAGACAAATAATTGACGGAGCAGAAACTTTTGTTGATGTTGAGTCAAATAAGCCATTAACAATAGCTA
TAAATGAAATAGATGAAGGATTTGTAAATTACAAAGACACTGAGGAGAAATAA

Upstream 100 bases:

>100_bases
GAAGATGCAGTAAAGAAAATAGAAGCTATATTATTAGCAGAAAAATGTAGAGTAGATAGATTAAAAGAAAACTTATTAGA
GTCAAAGGAGGACGAAATGC

Downstream 100 bases:

>100_bases
GAGCTATGAAAGATAAGAAATGTGTTGTTGTAGGAGTAAGTGGAGGAGTAGCTGTTTATAAAGCCTTAGACGTTATAAGC
AGACTAAGAAAAAAAGATGT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 70; Mature: 70

Protein sequence:

>70_residues
MNNSMINPSIVDLLKRVEDRYSLVILSAKRARQIIDGAETFVDVESNKPLTIAINEIDEGFVNYKDTEEK

Sequences:

>Translated_70_residues
MNNSMINPSIVDLLKRVEDRYSLVILSAKRARQIIDGAETFVDVESNKPLTIAINEIDEGFVNYKDTEEK
>Mature_70_residues
MNNSMINPSIVDLLKRVEDRYSLVILSAKRARQIIDGAETFVDVESNKPLTIAINEIDEGFVNYKDTEEK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_CLOP1 (Q0TPK7)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_696433.1
- STRING:   Q0TPK7
- GeneID:   4203913
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_2000
- TIGR:   CPF_2000
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   MEKVDSK
- ProtClustDB:   PRK00392
- BioCyc:   CPER195103:CPF_2000-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7971; Mature: 7971

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSMINPSIVDLLKRVEDRYSLVILSAKRARQIIDGAETFVDVESNKPLTIAINEIDEG
CCCCCCCHHHHHHHHHHHHHHEEEEEEHHHHHHHHCCHHHEEECCCCCCEEEEEECCCCC
FVNYKDTEEK
CCCCCCCCCC
>Mature Secondary Structure
MNNSMINPSIVDLLKRVEDRYSLVILSAKRARQIIDGAETFVDVESNKPLTIAINEIDEG
CCCCCCCHHHHHHHHHHHHHHEEEEEEHHHHHHHHCCHHHEEECCCCCCEEEEEECCCCC
FVNYKDTEEK
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA