Click here to switch to the map view.

The map label for this gene is yhcC [C]

Identifier: 18310699

GI number: 18310699

Start: 1996363

End: 1997436

Strand: Reverse

Name: yhcC [C]

Synonym: CPE1717

Alternate gene names: 18310699

Gene position: 1997436-1996363 (Counterclockwise)

Preceding gene: 18310700

Following gene: 18310698

Centisome position: 65.89

GC content: 29.24

Gene sequence:

>1074_bases
ATGGGAAAAAGACACTATATAATCCCAATTTTTGTTCCTCATGAAGGATGTCCACATGATTGCGTGTTTTGTAATCAAGG
GAAAATAACTGGAGAAAATAAAGAGATTATATTAGGGCCAAAGTACAAGCAAGAAAATAAGGTTAATAGTGATTTTGTAA
GAAAGACAATTGAAGAATATATAGAAACAATTGGTGAAGGAGATAGAATATTAGAGGTTTCTTTCTTTGGAGGAACTTTT
ACTGCTATTGATATAAATAAGCAAAGAGAACTATTAGCTGTTGCAAAAGAATATAAGGATAAAAAAATTATAGACTATAT
AAGGTTGTCTACTAGACCAGATTATATTGATGAGTTTATTTTAGATCATTTAAAAAGTTATAAAGTTGATATAATAGAAC
TTGGAGTTCAGTCTTTAGATAAGGAAGTGTTGCATAAATCAGGTAGAGGTCATGGTTATGATGAGGTTCTAAAAGCTTCT
AAGTTAATTAAAGAATATGGTTTTACTTTAGGTCATCAAATAATGGTAGGACTTCCTGAGGATACTTTTGAGAAAGATAT
AGAAACAACAAAAGAGTCTATAAAGATGAAACCTGATATATGTAGAATATATCCTGCCCTTACAGTGAAAAACACTCCTA
TGGAGGATATGTACTTAGAGGGAACTTATAAGCCATATACTCTAGAAGAGGCTGTATATATAAGTGCTAAACTTTATAAG
ATGTATAAAGAAAATAATATACAGGTTATAAGAATTGGTTTGCAGCCTACAGATAATATAGCTTTAGGTAAGGATATTGT
AGATGGGCCTTTCCATCCTGCTTTTAGGGAATTAGTAGAGAGTAGTATTATAAATGAAAATATATATAATATCTTAAAGG
ATAAAAGTGGAGAGGTAACTATAAGAATTAGCAATAAATCAGTTTCTAAGCTTTATGCTGATAAAAAGAGATACTTCAAT
GAACTTAAAGACAAGGCACAAAATTGTAATTTGAAGGTTAAAGTAGATAATTCTATGGAAGTAGATAAAATAAATATAGA
AGTAGAATCGAAAGTATATAAAATAGATTTATAG

Upstream 100 bases:

>100_bases
TAATTAATAATGAGATTATGGGTCAAGGTGTTGGATTTAGTAAAAAAGAATCAGAACAAAATGCAGCTAAAGCAGCACTA
CAAAGGTTAGGTGAAATTAA

Downstream 100 bases:

>100_bases
TTATTATATGCCTTGGAGTTGATCTCTGAGGCTTTTTTTATTGATATTTTAATTGGCATAATATAAACTTATACCATGAG
GAGTGAAGTACAGTGAGAAA

Product: radical SAM domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MGKRHYIIPIFVPHEGCPHDCVFCNQGKITGENKEIILGPKYKQENKVNSDFVRKTIEEYIETIGEGDRILEVSFFGGTF
TAIDINKQRELLAVAKEYKDKKIIDYIRLSTRPDYIDEFILDHLKSYKVDIIELGVQSLDKEVLHKSGRGHGYDEVLKAS
KLIKEYGFTLGHQIMVGLPEDTFEKDIETTKESIKMKPDICRIYPALTVKNTPMEDMYLEGTYKPYTLEEAVYISAKLYK
MYKENNIQVIRIGLQPTDNIALGKDIVDGPFHPAFRELVESSIINENIYNILKDKSGEVTIRISNKSVSKLYADKKRYFN
ELKDKAQNCNLKVKVDNSMEVDKINIEVESKVYKIDL

Sequences:

>Translated_357_residues
MGKRHYIIPIFVPHEGCPHDCVFCNQGKITGENKEIILGPKYKQENKVNSDFVRKTIEEYIETIGEGDRILEVSFFGGTF
TAIDINKQRELLAVAKEYKDKKIIDYIRLSTRPDYIDEFILDHLKSYKVDIIELGVQSLDKEVLHKSGRGHGYDEVLKAS
KLIKEYGFTLGHQIMVGLPEDTFEKDIETTKESIKMKPDICRIYPALTVKNTPMEDMYLEGTYKPYTLEEAVYISAKLYK
MYKENNIQVIRIGLQPTDNIALGKDIVDGPFHPAFRELVESSIINENIYNILKDKSGEVTIRISNKSVSKLYADKKRYFN
ELKDKAQNCNLKVKVDNSMEVDKINIEVESKVYKIDL
>Mature_356_residues
GKRHYIIPIFVPHEGCPHDCVFCNQGKITGENKEIILGPKYKQENKVNSDFVRKTIEEYIETIGEGDRILEVSFFGGTFT
AIDINKQRELLAVAKEYKDKKIIDYIRLSTRPDYIDEFILDHLKSYKVDIIELGVQSLDKEVLHKSGRGHGYDEVLKASK
LIKEYGFTLGHQIMVGLPEDTFEKDIETTKESIKMKPDICRIYPALTVKNTPMEDMYLEGTYKPYTLEEAVYISAKLYKM
YKENNIQVIRIGLQPTDNIALGKDIVDGPFHPAFRELVESSIINENIYNILKDKSGEVTIRISNKSVSKLYADKKRYFNE
LKDKAQNCNLKVKVDNSMEVDKINIEVESKVYKIDL

Specific function: Unknown

COG id: COG1243

COG function: function code KB; Histone acetyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 N-acetyltransferase domain [H]

Homologues:

Organism=Homo sapiens, GI23510283, Length=265, Percent_Identity=25.2830188679245, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI133955098, Length=249, Percent_Identity=24.4979919678715, Blast_Score=69, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6325171, Length=138, Percent_Identity=31.1594202898551, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19920684, Length=262, Percent_Identity=24.8091603053435, Blast_Score=72, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000182
- InterPro:   IPR016181
- InterPro:   IPR006638
- InterPro:   IPR005910
- InterPro:   IPR007197 [H]

Pfam domain/function: PF00583 Acetyltransf_1; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 41143; Mature: 41012

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKRHYIIPIFVPHEGCPHDCVFCNQGKITGENKEIILGPKYKQENKVNSDFVRKTIEEY
CCCCEEEEEEEECCCCCCCCCEEECCCEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
IETIGEGDRILEVSFFGGTFTAIDINKQRELLAVAKEYKDKKIIDYIRLSTRPDYIDEFI
HHHHCCCCEEEEEEEECCEEEEEECCCHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHH
LDHLKSYKVDIIELGVQSLDKEVLHKSGRGHGYDEVLKASKLIKEYGFTLGHQIMVGLPE
HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
DTFEKDIETTKESIKMKPDICRIYPALTVKNTPMEDMYLEGTYKPYTLEEAVYISAKLYK
HHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEECCCCCCEEECHHHHHHHHHHH
MYKENNIQVIRIGLQPTDNIALGKDIVDGPFHPAFRELVESSIINENIYNILKDKSGEVT
HHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
IRISNKSVSKLYADKKRYFNELKDKAQNCNLKVKVDNSMEVDKINIEVESKVYKIDL
EEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEECEEEEECC
>Mature Secondary Structure 
GKRHYIIPIFVPHEGCPHDCVFCNQGKITGENKEIILGPKYKQENKVNSDFVRKTIEEY
CCCEEEEEEEECCCCCCCCCEEECCCEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
IETIGEGDRILEVSFFGGTFTAIDINKQRELLAVAKEYKDKKIIDYIRLSTRPDYIDEFI
HHHHCCCCEEEEEEEECCEEEEEECCCHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHH
LDHLKSYKVDIIELGVQSLDKEVLHKSGRGHGYDEVLKASKLIKEYGFTLGHQIMVGLPE
HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
DTFEKDIETTKESIKMKPDICRIYPALTVKNTPMEDMYLEGTYKPYTLEEAVYISAKLYK
HHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEECCCCCCEEECHHHHHHHHHHH
MYKENNIQVIRIGLQPTDNIALGKDIVDGPFHPAFRELVESSIINENIYNILKDKSGEVT
HHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
IRISNKSVSKLYADKKRYFNELKDKAQNCNLKVKVDNSMEVDKINIEVESKVYKIDL
EEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEECEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]