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The map label for this gene is rbgA [H]

Identifier: 18310689

GI number: 18310689

Start: 1986525

End: 1987370

Strand: Reverse

Name: rbgA [H]

Synonym: CPE1707

Alternate gene names: 18310689

Gene position: 1987370-1986525 (Counterclockwise)

Preceding gene: 18310690

Following gene: 18310688

Centisome position: 65.56

GC content: 30.26

Gene sequence:

>846_bases
ATGGCAATAAACTGGTTCCCTGGCCATATGGTCAAAACGAAAAGAGAAATACAGAACAATTTAAAGCTTGTAGATGCTGT
TATAGAAATTAGAGATGCTAGAATACCTAAATCTTCTAAAAATCCAGATATAGACACTCTATGTGCTGGTAAGCCTAGAG
TAATACTTTTAAATAAGAGTGACTTAACTGATCCTAAGGTAACTAAAGCTTGGAAAGATAGCTTAACTAATGATGAAACA
ATTGTTTTAGAAGTAAACGCTTTAAAAGGTGAAGGATTAAATGCTATAAAACCTGCTCTTTTAAAACTTTTAAAAGAGAA
ACATGATAGATTAAAAGCTAAAGGTTTAGCTAAAATCACTACTAGAGCTATGGTTGTTGGAATACCTAACGTTGGTAAAT
CAACATTTATAAATAAAATGGCTAAAAATAATATAGCTAAAACTGGAGATAGACCAGGTGTTACTAAGAATAAACAATGG
ATAAAAACTAAGTTAGGTATAGAATTAATGGATACACCAGGAGTTTTATGGCCTAAATTTGAGGATGAGATCGTTGGATT
AAATTTAGCATTTACTGGAGCTATAAAAGACGAAATAATGGATACTGAAGAATTAGCTCTTAAACTAGTTGAAAGACTTC
AAGAAACAAATCCAGAAGAATTAATGACTAGATATAAACTTACAGAACTTCATGAAAATCCATTAGATAATTTAGATGCT
ATAGCTAGAAAAAGAGGAGCTATAATGTCAGGTAATCAAATAGATTACAATAGAATTGCAGGAATAATTTTAGATGAATT
TAGAGGCGGAAAAATAGGAAAAATATCTTTAGAAAAACCAGAATAG

Upstream 100 bases:

>100_bases
ATAAAAATATTAGAATTTTACTTTAAACAATATTGATTTAATTTGTTTAAGATAATATATTGAATATAACCTAAAATAAA
AAATGGAAGGGTGATTTATT

Downstream 100 bases:

>100_bases
GAAGTAGGGTTTATTATGGATAATTTAATAAAAGATATGAGAGAAAATTTAAATTCATACTCTTTTAAAGTAGTAAGTGA
TTTAGTGAAAGAGTTAGAGG

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MAINWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDLTDPKVTKAWKDSLTNDET
IVLEVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTRAMVVGIPNVGKSTFINKMAKNNIAKTGDRPGVTKNKQW
IKTKLGIELMDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNLDA
IARKRGAIMSGNQIDYNRIAGIILDEFRGGKIGKISLEKPE

Sequences:

>Translated_281_residues
MAINWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDLTDPKVTKAWKDSLTNDET
IVLEVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTRAMVVGIPNVGKSTFINKMAKNNIAKTGDRPGVTKNKQW
IKTKLGIELMDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNLDA
IARKRGAIMSGNQIDYNRIAGIILDEFRGGKIGKISLEKPE
>Mature_280_residues
AINWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDLTDPKVTKAWKDSLTNDETI
VLEVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTRAMVVGIPNVGKSTFINKMAKNNIAKTGDRPGVTKNKQWI
KTKLGIELMDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNLDAI
ARKRGAIMSGNQIDYNRIAGIILDEFRGGKIGKISLEKPE

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=294, Percent_Identity=31.9727891156463, Blast_Score=139, Evalue=3e-33,
Organism=Homo sapiens, GI7019419, Length=258, Percent_Identity=27.906976744186, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI296317324, Length=288, Percent_Identity=26.0416666666667, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI9506611, Length=288, Percent_Identity=26.0416666666667, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193211047, Length=216, Percent_Identity=32.4074074074074, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17534827, Length=275, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI32563985, Length=221, Percent_Identity=28.5067873303167, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71990926, Length=221, Percent_Identity=28.5067873303167, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32563983, Length=221, Percent_Identity=28.5067873303167, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6324381, Length=253, Percent_Identity=25.6916996047431, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6320842, Length=285, Percent_Identity=28.4210526315789, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6323744, Length=231, Percent_Identity=28.1385281385281, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85815858, Length=309, Percent_Identity=29.7734627831715, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI19922460, Length=263, Percent_Identity=27.3764258555133, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 31390; Mature: 31259

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKS
CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEECCC
DLTDPKVTKAWKDSLTNDETIVLEVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKIT
CCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
TRAMVVGIPNVGKSTFINKMAKNNIAKTGDRPGVTKNKQWIKTKLGIELMDTPGVLWPKF
HEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCC
EDEIVGLNLAFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNLDA
CCCEEEEEEEEECCHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
IARKRGAIMSGNQIDYNRIAGIILDEFRGGKIGKISLEKPE
HHHHCCCEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCC
>Mature Secondary Structure 
AINWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKS
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEECCC
DLTDPKVTKAWKDSLTNDETIVLEVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKIT
CCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
TRAMVVGIPNVGKSTFINKMAKNNIAKTGDRPGVTKNKQWIKTKLGIELMDTPGVLWPKF
HEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCC
EDEIVGLNLAFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNLDA
CCCEEEEEEEEECCHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
IARKRGAIMSGNQIDYNRIAGIILDEFRGGKIGKISLEKPE
HHHHCCCEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]