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The map label for this gene is rnhB [H]

Identifier: 18310688

GI number: 18310688

Start: 1985691

End: 1986509

Strand: Reverse

Name: rnhB [H]

Synonym: CPE1706

Alternate gene names: 18310688

Gene position: 1986509-1985691 (Counterclockwise)

Preceding gene: 18310689

Following gene: 18310686

Centisome position: 65.53

GC content: 27.23

Gene sequence:

>819_bases
ATGGATAATTTAATAAAAGATATGAGAGAAAATTTAAATTCATACTCTTTTAAAGTAGTAAGTGATTTAGTGAAAGAGTT
AGAGGTAAATAGAGACAACAAAGCTCAAATAAAAGAACTTGCTGACTTATTAAAAGAGGATAAAAGAAAAAATGTATCAT
CTTTAGGAAATAGATTAGAGAAAAACCTAAATAATCTTATTAAAGAAGAAGAAAGAGTTAAAAATATGTATCTTTTTGAT
AAGAGTTTTGGTGATTATAAGTATGTAGCTGGAGTTGATGAGGTTGGAAGAGGACCTTTAGCAGGTCCCATAGTTTCAGC
AGCGGTAATATTAGATTCTAGTGATTTAGATGATATAATTCTTTACATAAATGACTCAAAAAAATTATCAGAACATAAAA
GAGAAGAATTAAGTGAAATCATAAAAGAAAAAGCTTTAAGTTATTCTATTTCAATGTGTGATAGCAAGGAAATAGATGAA
AAAGGCATAGGATACTGTAATAATGAAGTATTCATAAAAGCTTGTGAAGGACTAAGCATAAAGCCAGATTTAGTTCTTTC
AGATGGATATTTAATAAAGAACTTTAATGGAGAAAATAAGCATGTTATAAAAGGTGATACAAAAAGTGCTTGTATAGCCT
GTGCTTCAATAATTGCAAAAGTTTATAGAGATAATATTATGAAGGAATATAATAAAAAATATCCACAATATGATTTTGAA
AAAAATGTTGGTTATGGAACTAAGACTCATGTAGATGCTTTAAAAGAAGTAGGGCCTACAGAAATTCATAGAATGAGTTT
TTTAAAGAATATTCTATAG

Upstream 100 bases:

>100_bases
AGATTACAATAGAATTGCAGGAATAATTTTAGATGAATTTAGAGGCGGAAAAATAGGAAAAATATCTTTAGAAAAACCAG
AATAGGAAGTAGGGTTTATT

Downstream 100 bases:

>100_bases
TTATACCCTAAAAGCATCTTTTAAAAAGTTTAATTCATACTTTGAACTATCAATATGAAAGTTAATTTCAATAACATCAA
ATCTAATATAATAATTGTAG

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MDNLIKDMRENLNSYSFKVVSDLVKELEVNRDNKAQIKELADLLKEDKRKNVSSLGNRLEKNLNNLIKEEERVKNMYLFD
KSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDE
KGIGYCNNEVFIKACEGLSIKPDLVLSDGYLIKNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYNKKYPQYDFE
KNVGYGTKTHVDALKEVGPTEIHRMSFLKNIL

Sequences:

>Translated_272_residues
MDNLIKDMRENLNSYSFKVVSDLVKELEVNRDNKAQIKELADLLKEDKRKNVSSLGNRLEKNLNNLIKEEERVKNMYLFD
KSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDE
KGIGYCNNEVFIKACEGLSIKPDLVLSDGYLIKNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYNKKYPQYDFE
KNVGYGTKTHVDALKEVGPTEIHRMSFLKNIL
>Mature_272_residues
MDNLIKDMRENLNSYSFKVVSDLVKELEVNRDNKAQIKELADLLKEDKRKNVSSLGNRLEKNLNNLIKEEERVKNMYLFD
KSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDE
KGIGYCNNEVFIKACEGLSIKPDLVLSDGYLIKNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYNKKYPQYDFE
KNVGYGTKTHVDALKEVGPTEIHRMSFLKNIL

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=185, Percent_Identity=45.945945945946, Blast_Score=149, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 30896; Mature: 30896

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLIKDMRENLNSYSFKVVSDLVKELEVNRDNKAQIKELADLLKEDKRKNVSSLGNRLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
KNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDII
HHHHHHHHHHHHHHHHHHEECCCCCCHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCCEEE
LYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNEVFIKACEGLSI
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC
KPDLVLSDGYLIKNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYNKKYPQYDFE
CCCEEEECCEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KNVGYGTKTHVDALKEVGPTEIHRMSFLKNIL
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNLIKDMRENLNSYSFKVVSDLVKELEVNRDNKAQIKELADLLKEDKRKNVSSLGNRLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
KNLNNLIKEEERVKNMYLFDKSFGDYKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDII
HHHHHHHHHHHHHHHHHHEECCCCCCHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCCEEE
LYINDSKKLSEHKREELSEIIKEKALSYSISMCDSKEIDEKGIGYCNNEVFIKACEGLSI
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC
KPDLVLSDGYLIKNFNGENKHVIKGDTKSACIACASIIAKVYRDNIMKEYNKKYPQYDFE
CCCEEEECCEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KNVGYGTKTHVDALKEVGPTEIHRMSFLKNIL
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA