| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is cdsA [H]
Identifier: 18310677
GI number: 18310677
Start: 1974432
End: 1975226
Strand: Reverse
Name: cdsA [H]
Synonym: CPE1695
Alternate gene names: 18310677
Gene position: 1975226-1974432 (Counterclockwise)
Preceding gene: 18310678
Following gene: 18310676
Centisome position: 65.16
GC content: 27.3
Gene sequence:
>795_bases GTGAAATCTAATAGCAGATATCTAGGCGCACTTATAATGGCTCCATTTATTGCGTTTATATTCCTAGGTGGAATTTGGCT TAAGCTATTTACTATTGCTCTTTCTTTTGCAGGATTATATGAATATTATAAAACTGTTAAAATAGCAAAATTAAAGCCTA TTTCTATAGGGGGATATATATTATTAATATTATATTACTTAACTTCAAATAATTTTGAAATGTTATCATTTTTAATAATA ATAGCTACATTTATATTACTTTGTGTTCCTATACTTAATATTGAATATACATTTATAGATGTTGCAGTTACTATTTTAGG ATTTATATATGTAGGAGTTTTCTTTAGCTTCATACATTTAGTAAACATCAAAGAAGGTGGACAATACCTAGTTTGGTTAA TATTCCTATCATCATGGCTTTGTGATACTGCTGCATACTATTCAGGTAGATTCTTTGGTAAACACAAATTATGTCCAAAG GTTAGTCCTAAGAAGACTATAGAAGGTTCTATAGGAGGAATATTAGGAAGTACATTAGCTTGTGGAATATTTGGTATAAT AATATCTAATAGTTTCTCTTTAATACCTGTATATCATTATTTTATAATAGGTATATTATGTGGAGTATTCTGTCAATTTG GTGATTTAGTTGCTTCATCAATAAAGAGATACGCAGGAATAAAAGATTATAGTAATTTAATACCAGGACATGGTGGAATA TTAGATAGATTTGACAGTATATTATTTGCTGGAACAATAGTATTCTTCTATTTAACACTTGTCTTAAAATTTTAA
Upstream 100 bases:
>100_bases GGCCAGATTTTAATGGTGAAGATTTAAGAAAAGCTATTTTTGATTATCAAAATAGAGATAGAAGATTTGGTGGAATTAAA TAAATAATGAGGTGATTTGG
Downstream 100 bases:
>100_bases TGCTTTAGATTTTCTAAAGCATTTTTTTTATAAAAAATTTTATTTATATTTATTTGTAGGCATAAAAATTTTATTATACT TTTAACTTAAAAAGAAAAAT
Product: phosphatidate cytidylyltransferase
Products: NA
Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MKSNSRYLGALIMAPFIAFIFLGGIWLKLFTIALSFAGLYEYYKTVKIAKLKPISIGGYILLILYYLTSNNFEMLSFLII IATFILLCVPILNIEYTFIDVAVTILGFIYVGVFFSFIHLVNIKEGGQYLVWLIFLSSWLCDTAAYYSGRFFGKHKLCPK VSPKKTIEGSIGGILGSTLACGIFGIIISNSFSLIPVYHYFIIGILCGVFCQFGDLVASSIKRYAGIKDYSNLIPGHGGI LDRFDSILFAGTIVFFYLTLVLKF
Sequences:
>Translated_264_residues MKSNSRYLGALIMAPFIAFIFLGGIWLKLFTIALSFAGLYEYYKTVKIAKLKPISIGGYILLILYYLTSNNFEMLSFLII IATFILLCVPILNIEYTFIDVAVTILGFIYVGVFFSFIHLVNIKEGGQYLVWLIFLSSWLCDTAAYYSGRFFGKHKLCPK VSPKKTIEGSIGGILGSTLACGIFGIIISNSFSLIPVYHYFIIGILCGVFCQFGDLVASSIKRYAGIKDYSNLIPGHGGI LDRFDSILFAGTIVFFYLTLVLKF >Mature_264_residues MKSNSRYLGALIMAPFIAFIFLGGIWLKLFTIALSFAGLYEYYKTVKIAKLKPISIGGYILLILYYLTSNNFEMLSFLII IATFILLCVPILNIEYTFIDVAVTILGFIYVGVFFSFIHLVNIKEGGQYLVWLIFLSSWLCDTAAYYSGRFFGKHKLCPK VSPKKTIEGSIGGILGSTLACGIFGIIISNSFSLIPVYHYFIIGILCGVFCQFGDLVASSIKRYAGIKDYSNLIPGHGGI LDRFDSILFAGTIVFFYLTLVLKF
Specific function: Phospholipid biosynthesis. [C]
COG id: COG0575
COG function: function code I; CDP-diglyceride synthetase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI87081696, Length=135, Percent_Identity=43.7037037037037, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1787677, Length=117, Percent_Identity=41.8803418803419, Blast_Score=93, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: =2.7.7.41 [H]
Molecular weight: Translated: 29451; Mature: 29451
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: PS01315 CDS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSNSRYLGALIMAPFIAFIFLGGIWLKLFTIALSFAGLYEYYKTVKIAKLKPISIGGYI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHH LLILYYLTSNNFEMLSFLIIIATFILLCVPILNIEYTFIDVAVTILGFIYVGVFFSFIHL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH VNIKEGGQYLVWLIFLSSWLCDTAAYYSGRFFGKHKLCPKVSPKKTIEGSIGGILGSTLA HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHH CGIFGIIISNSFSLIPVYHYFIIGILCGVFCQFGDLVASSIKRYAGIKDYSNLIPGHGGI HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCH LDRFDSILFAGTIVFFYLTLVLKF HHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKSNSRYLGALIMAPFIAFIFLGGIWLKLFTIALSFAGLYEYYKTVKIAKLKPISIGGYI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHH LLILYYLTSNNFEMLSFLIIIATFILLCVPILNIEYTFIDVAVTILGFIYVGVFFSFIHL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH VNIKEGGQYLVWLIFLSSWLCDTAAYYSGRFFGKHKLCPKVSPKKTIEGSIGGILGSTLA HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHH CGIFGIIISNSFSLIPVYHYFIIGILCGVFCQFGDLVASSIKRYAGIKDYSNLIPGHGGI HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCH LDRFDSILFAGTIVFFYLTLVLKF HHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA