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The map label for this gene is rimP

Identifier: 18310672

GI number: 18310672

Start: 1965706

End: 1966170

Strand: Reverse

Name: rimP

Synonym: CPE1690

Alternate gene names: 18310672

Gene position: 1966170-1965706 (Counterclockwise)

Preceding gene: 18310673

Following gene: 18310671

Centisome position: 64.86

GC content: 28.17

Gene sequence:

>465_bases
ATGAAAAAAGAACAACTTGTAGCTGATCTTGAAGCACTTTGTGCTCCTATAGTTAAAGAAAAGGGATATGATTTATATCA
TATTGAATATGTAAAAGAAAATAATGAATATTATTTAAGATTATATATAGAAAAGCCAGAGGAGAGAATTTCTCTAAGGG
ATTGTGAAATTGTAAGTAGAGCATTAAGTGATATGCTTGATATAGAAGATCCAATAAAAGATGCGTACTTCTTAGAAGTT
TCATCACCAGGATTAAATAGAAGATTACATAGTGATGAGCATTTTAATAGATTTATAGGAAAAGAAGTTTTTGTTGGATT
TAAGAGTTCTTTAAGTGGAAGAAAAAATGTAAAAGGAATTCTTAAAGATGTACAAGAAAATGAAATAATAGTTGAATGTG
AAGGGAATGAAATAAAAGTTCCTAAAGATAAAATTAAGACAGCGAACCTTGAAGGGGAGATATAA

Upstream 100 bases:

>100_bases
TTGCGTTTTTGCATACCTATTATTATATAAATTAATAGGTATTTGCTTTATTGGATACAATAAAGATAAGATTTAAAACT
TAATAAGGGAGGGAAGTATA

Downstream 100 bases:

>100_bases
TTTTAAGGAGGGTTTAAAAATGAATGAAGAATTTCTAGGGGCATTATCTGAAATAGTAAAAGAGAAAGGTATTTCAGTAG
AGGCTTTATTAGAAACTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MKKEQLVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDMLDIEDPIKDAYFLEV
SSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGILKDVQENEIIVECEGNEIKVPKDKIKTANLEGEI

Sequences:

>Translated_154_residues
MKKEQLVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDMLDIEDPIKDAYFLEV
SSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGILKDVQENEIIVECEGNEIKVPKDKIKTANLEGEI
>Mature_154_residues
MKKEQLVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSRALSDMLDIEDPIKDAYFLEV
SSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGILKDVQENEIIVECEGNEIKVPKDKIKTANLEGEI

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=140, Percent_Identity=40, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_CLOP1 (Q0TPR3)

Other databases:

- EMBL:   CP000246
- RefSeq:   YP_696377.1
- ProteinModelPortal:   Q0TPR3
- SMR:   Q0TPR3
- STRING:   Q0TPR3
- GeneID:   4202626
- GenomeReviews:   CP000246_GR
- KEGG:   cpf:CPF_1944
- TIGR:   CPF_1944
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   TIENCAA
- ProtClustDB:   PRK00092
- BioCyc:   CPER195103:CPF_1944-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 17837; Mature: 17837

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEQLVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSR
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEEECCHHHCCHHHHHHHHH
ALSDMLDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGI
HHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LKDVQENEIIVECEGNEIKVPKDKIKTANLEGEI
HHHHCCCCEEEEECCCEEECCHHHHEECCCCCCC
>Mature Secondary Structure
MKKEQLVADLEALCAPIVKEKGYDLYHIEYVKENNEYYLRLYIEKPEERISLRDCEIVSR
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEEECCHHHCCHHHHHHHHH
ALSDMLDIEDPIKDAYFLEVSSPGLNRRLHSDEHFNRFIGKEVFVGFKSSLSGRKNVKGI
HHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LKDVQENEIIVECEGNEIKVPKDKIKTANLEGEI
HHHHCCCCEEEEECCCEEECCHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA