| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310661
Identifier: 18310661
GI number: 18310661
Start: 1955789
End: 1956064
Strand: Reverse
Name: 18310661
Synonym: CPE1679
Alternate gene names: NA
Gene position: 1956064-1955789 (Counterclockwise)
Preceding gene: 18310662
Following gene: 18310660
Centisome position: 64.53
GC content: 26.09
Gene sequence:
>276_bases ATGAGTAATAATGTTAGATATTTAAGCGAAATAGAAAGATATGAAATTATAAACATAAATGATGGTGAAAAGTATAGCGG ACTTATAAATAATGATGTTATTATAGATGAAGAAGGAAAGCTAAAATATTTAATAGTAAACTTAGGTGGTGGCAAGTTTA ATCTTTTTAACTCAGATGAATACTTAGAAATCGAGTGGGAAAATGTAAAAAGAATAGGAGCTAAAACCATAATATTAGAT GTAGATAGTGATATGATAAAAAAAACTAAGCTGTAG
Upstream 100 bases:
>100_bases TCTTATTCATAAAGCCTACCTCTTTTAATGAGAATTGACATATATTATTTATAATCAACATATTATTTATTGTTTTAATA AATAAGTGGAGGTATGTTTT
Downstream 100 bases:
>100_bases GAGTGTGGGGATTTTGAAAATAGTAGTACAAAAATTTGGTGGTACTTCTGTATCAACAAAAGAAAGAAGAACTATGGTTG TAGAAAAGGTAAAAGGGGCA
Product: PRC-barrel domain protein
Products: NA
Alternate protein names: Sporulation Protein YlmC/YmxH Family; PRC-Barrel Domain-Containing Protein; Sporulation Protein YlmC/YmxH
Number of amino acids: Translated: 91; Mature: 90
Protein sequence:
>91_residues MSNNVRYLSEIERYEIININDGEKYSGLINNDVIIDEEGKLKYLIVNLGGGKFNLFNSDEYLEIEWENVKRIGAKTIILD VDSDMIKKTKL
Sequences:
>Translated_91_residues MSNNVRYLSEIERYEIININDGEKYSGLINNDVIIDEEGKLKYLIVNLGGGKFNLFNSDEYLEIEWENVKRIGAKTIILD VDSDMIKKTKL >Mature_90_residues SNNVRYLSEIERYEIININDGEKYSGLINNDVIIDEEGKLKYLIVNLGGGKFNLFNSDEYLEIEWENVKRIGAKTIILDV DSDMIKKTKL
Specific function: Unknown
COG id: COG1873
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10530; Mature: 10399
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNNVRYLSEIERYEIININDGEKYSGLINNDVIIDEEGKLKYLIVNLGGGKFNLFNSDE CCCCCCHHCCCCEEEEEECCCCCCCCCEECCCEEEECCCCEEEEEEEECCCEEEEECCCC YLEIEWENVKRIGAKTIILDVDSDMIKKTKL EEEEEECCCCCCCCEEEEEECCCCHHHCCCC >Mature Secondary Structure SNNVRYLSEIERYEIININDGEKYSGLINNDVIIDEEGKLKYLIVNLGGGKFNLFNSDE CCCCCHHCCCCEEEEEECCCCCCCCCEECCCEEEECCCCEEEEEEEECCCEEEEECCCC YLEIEWENVKRIGAKTIILDVDSDMIKKTKL EEEEEECCCCCCCCEEEEEECCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA