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The map label for this gene is rbsC [H]

Identifier: 18310611

GI number: 18310611

Start: 1901898

End: 1902833

Strand: Reverse

Name: rbsC [H]

Synonym: CPE1629

Alternate gene names: 18310611

Gene position: 1902833-1901898 (Counterclockwise)

Preceding gene: 18310612

Following gene: 18310610

Centisome position: 62.77

GC content: 31.09

Gene sequence:

>936_bases
ATGAAAGCGAATGTTAAAGCAAATATATCTAAATATAAATCCCTTATAGGACTAGTATTATTATGTATAGTTATTACTAT
AGTTACTCCAAACTTTTTAAGTGTATCTAATATAACTAACGTATTTACACAGGTTTCAGTTAATGCAATCATAGCAATAG
GTATGACTTTCGTAATTTTAACTGGTGGAATAGACTTATCAGTTGGATCTACTTTAGCTATTAGTGGTGCCGTAGGGGCT
TCTATTGTTAAGTCGACTGGAAACGTATTCTTAGCAATTATAGTGGCAGCTGTTATTGGTATAGCAGTTGGATTAATAAA
TGGTTTATTAGTATCAAAAGGAAAACTACAAGCATTCATAGTTACTTTAGCTACAATGACAATATTTAGAGGAGCTACTT
TAGTATTTACAGATGGTACTCCAATATCAAAATTACCTGAAGCTTTTGTTAAAATAGGAAATGGTAAACTTGGATTTATG
CCAATACCAGTTATAATAACAATAATAATAGCAATCATAGCAGTATATGCTTTATCACAAACAAGATTTGGAAGATATTT
ATATGCTTTAGGTGGAAATGAAGATGCTTCAAGATTATCAGGAATAAATACAGATAAGATAAAAACTTTAGTTTATGTGG
TATCAGGTTTTGCCTCAGCTATTGCAGGGGTAATAATAACAAGTAGAATAGGATCTGCTTCACCTAATGCAGGAACAGGA
TTTGAATTAGATGCTATCGCTGCTGTAGTAATAGGAGGAACTTCTTTAGCAGGGGGAGAAGGAACAATCACAGGTACTTT
AATAGGTGCTCTTATTATAGGTGTACTTAATAATGGATTAAACCTTATGAATGTATCACCATTCTATCAATCAATAGTAA
AAGGTTTAGTTATATTAATAGCAGTACTTTTAGATAAAAAGAGCAGAAAAAATTAA

Upstream 100 bases:

>100_bases
AGTGAAGGAAGAATCTCTGGAGAATTAAATAGAGATGAAGCAAATCAAGAAAGTATAATGAAATTAGCCGTTGGAATAAA
CAATTAGGGAGGATTACATA

Downstream 100 bases:

>100_bases
GAAGCTTAAGAGGTGAGTTTTATGCATATAAATAAAAAGATATTTTCAGTTGGATTAATGCTCATGATGCTTATGACTTC
ATTTATAGGGTGTGGAAGAG

Product: ribose ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKANVKANISKYKSLIGLVLLCIVITIVTPNFLSVSNITNVFTQVSVNAIIAIGMTFVILTGGIDLSVGSTLAISGAVGA
SIVKSTGNVFLAIIVAAVIGIAVGLINGLLVSKGKLQAFIVTLATMTIFRGATLVFTDGTPISKLPEAFVKIGNGKLGFM
PIPVIITIIIAIIAVYALSQTRFGRYLYALGGNEDASRLSGINTDKIKTLVYVVSGFASAIAGVIITSRIGSASPNAGTG
FELDAIAAVVIGGTSLAGGEGTITGTLIGALIIGVLNNGLNLMNVSPFYQSIVKGLVILIAVLLDKKSRKN

Sequences:

>Translated_311_residues
MKANVKANISKYKSLIGLVLLCIVITIVTPNFLSVSNITNVFTQVSVNAIIAIGMTFVILTGGIDLSVGSTLAISGAVGA
SIVKSTGNVFLAIIVAAVIGIAVGLINGLLVSKGKLQAFIVTLATMTIFRGATLVFTDGTPISKLPEAFVKIGNGKLGFM
PIPVIITIIIAIIAVYALSQTRFGRYLYALGGNEDASRLSGINTDKIKTLVYVVSGFASAIAGVIITSRIGSASPNAGTG
FELDAIAAVVIGGTSLAGGEGTITGTLIGALIIGVLNNGLNLMNVSPFYQSIVKGLVILIAVLLDKKSRKN
>Mature_311_residues
MKANVKANISKYKSLIGLVLLCIVITIVTPNFLSVSNITNVFTQVSVNAIIAIGMTFVILTGGIDLSVGSTLAISGAVGA
SIVKSTGNVFLAIIVAAVIGIAVGLINGLLVSKGKLQAFIVTLATMTIFRGATLVFTDGTPISKLPEAFVKIGNGKLGFM
PIPVIITIIIAIIAVYALSQTRFGRYLYALGGNEDASRLSGINTDKIKTLVYVVSGFASAIAGVIITSRIGSASPNAGTG
FELDAIAAVVIGGTSLAGGEGTITGTLIGALIIGVLNNGLNLMNVSPFYQSIVKGLVILIAVLLDKKSRKN

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=308, Percent_Identity=53.5714285714286, Blast_Score=299, Evalue=2e-82,
Organism=Escherichia coli, GI1790524, Length=303, Percent_Identity=42.2442244224422, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI145693152, Length=301, Percent_Identity=37.5415282392027, Blast_Score=200, Evalue=9e-53,
Organism=Escherichia coli, GI1789992, Length=342, Percent_Identity=37.719298245614, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1788896, Length=315, Percent_Identity=33.015873015873, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI87082395, Length=286, Percent_Identity=38.1118881118881, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1788471, Length=319, Percent_Identity=38.5579937304075, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI145693214, Length=249, Percent_Identity=40.1606425702811, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1787793, Length=280, Percent_Identity=32.5, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787794, Length=259, Percent_Identity=32.4324324324324, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 31869; Mature: 31869

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKANVKANISKYKSLIGLVLLCIVITIVTPNFLSVSNITNVFTQVSVNAIIAIGMTFVIL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
TGGIDLSVGSTLAISGAVGASIVKSTGNVFLAIIVAAVIGIAVGLINGLLVSKGKLQAFI
CCCCEEECCCEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VTLATMTIFRGATLVFTDGTPISKLPEAFVKIGNGKLGFMPIPVIITIIIAIIAVYALSQ
HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TRFGRYLYALGGNEDASRLSGINTDKIKTLVYVVSGFASAIAGVIITSRIGSASPNAGTG
HHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
FELDAIAAVVIGGTSLAGGEGTITGTLIGALIIGVLNNGLNLMNVSPFYQSIVKGLVILI
CCHHHHHHHEECCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHH
AVLLDKKSRKN
HHHHHHHCCCC
>Mature Secondary Structure
MKANVKANISKYKSLIGLVLLCIVITIVTPNFLSVSNITNVFTQVSVNAIIAIGMTFVIL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
TGGIDLSVGSTLAISGAVGASIVKSTGNVFLAIIVAAVIGIAVGLINGLLVSKGKLQAFI
CCCCEEECCCEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VTLATMTIFRGATLVFTDGTPISKLPEAFVKIGNGKLGFMPIPVIITIIIAIIAVYALSQ
HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TRFGRYLYALGGNEDASRLSGINTDKIKTLVYVVSGFASAIAGVIITSRIGSASPNAGTG
HHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
FELDAIAAVVIGGTSLAGGEGTITGTLIGALIIGVLNNGLNLMNVSPFYQSIVKGLVILI
CCHHHHHHHEECCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHH
AVLLDKKSRKN
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]