| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310554
Identifier: 18310554
GI number: 18310554
Start: 1840447
End: 1841112
Strand: Direct
Name: 18310554
Synonym: CPE1572
Alternate gene names: NA
Gene position: 1840447-1841112 (Clockwise)
Preceding gene: 18310541
Following gene: 18310567
Centisome position: 60.71
GC content: 23.42
Gene sequence:
>666_bases ATGAATGCAAAGGAATTTTTAGATAAAGAAAAAACTACTTATGGTAATCTTTACAGTGAGCTAATTTTTGTTTTAGATGA TATTGAAGATTTAAGTGAAGATTCTACTTTAAAGGAAAGAGCATACTACAAAAACATTAAAATATTAAAAAAATATAATG ATTTACTAGATAAGTTATCTAGAGAAGTTCCAGAAAAAAAATCTTTCCTGTCATTTTTAAATAAATCTAAAGAAAATGAA ATTATAAAAGAATGTGAAGATTTCAAAAAAACTTATAAAGATTCTCTTGATAAAATATTTGTATGTTCTAAATGCATGTG TGTAAAATGCATAAGAGAATGTGGCTTTAACCCATGTTTATCATGTAACAAAACTGGAAAAGTTAATTATTGTGATAAAG AAAATACTAATCTTATAGTATTTAAAAACTTTATAAAACAACAATACAATAATGAAACTAATGAAAATGAACCTCTTGAA ATTCTTTGTGAAGTGGAAATGTTAGATATGGACAAGCGTTTTAGAATAATTAAAGAAGTTTTAAGTGGTGAACAACTTGT ACTTGAGTATGTCTACAATATAAAAGATGGAGATTTATATAATTCAATTGAGGATGTAGACCTATTTAATGAAATAATAG ATATTTATGAAAGTAATAAGATATAA
Upstream 100 bases:
>100_bases ATTAAATTTTGTATATTTTAATAGTCTAAATTCATAATTATTTGATAATATATGATATCATAAATATATATATTATTTAT ATGGTGAAGGAGTATAGCAA
Downstream 100 bases:
>100_bases ATAAAAAGAAGATATTCAAATACTTAATAATTGCATGTATCAAAATAACTTCTTATAAAACTTACAAATAGCAAGAGAAT ATCTAGATCATCTTTAGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 221; Mature: 221
Protein sequence:
>221_residues MNAKEFLDKEKTTYGNLYSELIFVLDDIEDLSEDSTLKERAYYKNIKILKKYNDLLDKLSREVPEKKSFLSFLNKSKENE IIKECEDFKKTYKDSLDKIFVCSKCMCVKCIRECGFNPCLSCNKTGKVNYCDKENTNLIVFKNFIKQQYNNETNENEPLE ILCEVEMLDMDKRFRIIKEVLSGEQLVLEYVYNIKDGDLYNSIEDVDLFNEIIDIYESNKI
Sequences:
>Translated_221_residues MNAKEFLDKEKTTYGNLYSELIFVLDDIEDLSEDSTLKERAYYKNIKILKKYNDLLDKLSREVPEKKSFLSFLNKSKENE IIKECEDFKKTYKDSLDKIFVCSKCMCVKCIRECGFNPCLSCNKTGKVNYCDKENTNLIVFKNFIKQQYNNETNENEPLE ILCEVEMLDMDKRFRIIKEVLSGEQLVLEYVYNIKDGDLYNSIEDVDLFNEIIDIYESNKI >Mature_221_residues MNAKEFLDKEKTTYGNLYSELIFVLDDIEDLSEDSTLKERAYYKNIKILKKYNDLLDKLSREVPEKKSFLSFLNKSKENE IIKECEDFKKTYKDSLDKIFVCSKCMCVKCIRECGFNPCLSCNKTGKVNYCDKENTNLIVFKNFIKQQYNNETNENEPLE ILCEVEMLDMDKRFRIIKEVLSGEQLVLEYVYNIKDGDLYNSIEDVDLFNEIIDIYESNKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26146; Mature: 26146
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAKEFLDKEKTTYGNLYSELIFVLDDIEDLSEDSTLKERAYYKNIKILKKYNDLLDKLS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH REVPEKKSFLSFLNKSKENEIIKECEDFKKTYKDSLDKIFVCSKCMCVKCIRECGFNPCL HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SCNKTGKVNYCDKENTNLIVFKNFIKQQYNNETNENEPLEILCEVEMLDMDKRFRIIKEV CCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEHHHHHCHHHHHHHHHHH LSGEQLVLEYVYNIKDGDLYNSIEDVDLFNEIIDIYESNKI HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNAKEFLDKEKTTYGNLYSELIFVLDDIEDLSEDSTLKERAYYKNIKILKKYNDLLDKLS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH REVPEKKSFLSFLNKSKENEIIKECEDFKKTYKDSLDKIFVCSKCMCVKCIRECGFNPCL HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SCNKTGKVNYCDKENTNLIVFKNFIKQQYNNETNENEPLEILCEVEMLDMDKRFRIIKEV CCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEHHHHHCHHHHHHHHHHH LSGEQLVLEYVYNIKDGDLYNSIEDVDLFNEIIDIYESNKI HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA